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Frits Dannenberg
Frits Dannenberg
Affiliation inconnue
Adresse e-mail validée de caltech.edu - Page d'accueil
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Citée par
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Année
Guiding the folding pathway of DNA origami
KE Dunn, F Dannenberg, TE Ouldridge, M Kwiatkowska, AJ Turberfield, ...
Nature 525 (7567), 82-86, 2015
1962015
Precise parameter synthesis for stochastic biochemical systems
M Češka, F Dannenberg, N Paoletti, M Kwiatkowska, L Brim
Acta Informatica 54, 589-623, 2017
1192017
DNA walker circuits: computational potential, design, and verification
F Dannenberg, M Kwiatkowska, C Thachuk, AJ Turberfield
Natural Computing 14, 195-211, 2015
932015
Modelling DNA origami self-assembly at the domain level
F Dannenberg, KE Dunn, J Bath, M Kwiatkowska, AJ Turberfield, ...
The Journal of chemical physics 143 (16), 2015
382015
Automated sequence-level analysis of kinetics and thermodynamics for domain-level DNA strand-displacement systems
J Berleant, C Berlind, S Badelt, F Dannenberg, J Schaeffer, E Winfree
Journal of the Royal Society Interface 15 (149), 20180107, 2018
202018
Computing cumulative rewards using fast adaptive uniformization
F Dannenberg, EM Hahn, M Kwiatkowska
ACM Transactions on Modeling and Computer Simulation (TOMACS) 25 (2), 1-23, 2015
192015
Inferring parameters for an elementary step model of DNA structure kinetics with locally context-dependent Arrhenius rates
S Zolaktaf, F Dannenberg, X Rudelis, A Condon, JM Schaeffer, M Schmidt, ...
International Conference on DNA-Based Computers, 172-187, 2017
112017
Efficient parameter estimation for DNA kinetics modeled as continuous-time Markov chains
S Zolaktaf, F Dannenberg, E Winfree, A Bouchard-Côté, M Schmidt, ...
DNA Computing and Molecular Programming: 25th International Conference, DNA …, 2019
62019
Modelling and verification for DNA nanotechnology
F Dannenberg
University of Oxford, 2016
62016
Arithmetic self-similarity of infinite sequences
D Hendriks, FGW Dannenberg, J Endrullis, M Dow, JW Klop
arXiv preprint arXiv:1201.3786, 2012
42012
Predicting DNA kinetics with a truncated continuous-time Markov chain method
S Zolaktaf, F Dannenberg, M Schmidt, A Condon, E Winfree
Computational Biology and Chemistry 104, 107837, 2023
32023
Symbolic dynamics and automata theory
FGW Dannenberg
Master’s thesis, Delft University of Technology, 2011
32011
The pathway elaboration method for mean first passage time estimation in large continuous-time Markov chains with applications to nucleic acid kinetics
S Zolaktaf, F Dannenberg, M Schmidt, A Condon, E Winfree
arXiv preprint arXiv:2101.03657, 2021
12021
Folding pathways: DNA origami as a model system
KE Dunn, F Dannenberg, TE Ouldridge, M Kwiatkowska, J Bath, ...
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 44, S67-S67, 2015
2015
Automated Sequence-Level Analysis of Kinetics and Thermodynamics for Domain-Level DNA Strand-Displacement Systems: Supplementary Information (Technical Appendix)
J Berleant, C Berlind, S Badelt, F Dannenberg, J Schaeffer, E Winfree
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