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Frits Dannenberg
Frits Dannenberg
Unknown affiliation
Verified email at caltech.edu - Homepage
Title
Cited by
Cited by
Year
Guiding the folding pathway of DNA origami
KE Dunn, F Dannenberg, TE Ouldridge, M Kwiatkowska, AJ Turberfield, ...
Nature 525 (7567), 82-86, 2015
1692015
Precise parameter synthesis for stochastic biochemical systems
M Češka, F Dannenberg, N Paoletti, M Kwiatkowska, L Brim
Acta Informatica 54, 589-623, 2017
1072017
DNA walker circuits: computational potential, design, and verification
F Dannenberg, M Kwiatkowska, C Thachuk, AJ Turberfield
Natural Computing 14, 195-211, 2015
882015
Modelling DNA origami self-assembly at the domain level
F Dannenberg, KE Dunn, J Bath, M Kwiatkowska, AJ Turberfield, ...
The Journal of chemical physics 143 (16), 10B617_1, 2015
352015
Computing cumulative rewards using fast adaptive uniformization
F Dannenberg, EM Hahn, M Kwiatkowska
ACM Transactions on Modeling and Computer Simulation (TOMACS) 25 (2), 1-23, 2015
192015
Automated sequence-level analysis of kinetics and thermodynamics for domain-level DNA strand-displacement systems
J Berleant, C Berlind, S Badelt, F Dannenberg, J Schaeffer, E Winfree
Journal of the Royal Society Interface 15 (149), 20180107, 2018
152018
Inferring parameters for an elementary step model of DNA structure kinetics with locally context-dependent Arrhenius rates
S Zolaktaf, F Dannenberg, X Rudelis, A Condon, JM Schaeffer, M Schmidt, ...
DNA Computing and Molecular Programming: 23rd International Conference, DNA…, 2017
112017
Modelling and verification for DNA nanotechnology
FGW Dannenberg
University of Oxford, 2016
62016
Efficient parameter estimation for DNA kinetics modeled as continuous-time Markov chains
S Zolaktaf, F Dannenberg, E Winfree, A Bouchard-Ct, M Schmidt, ...
DNA Computing and Molecular Programming: 25th International Conference, DNA…, 2019
42019
Arithmetic self-similarity of infinite sequences
D Hendriks, FGW Dannenberg, J Endrullis, M Dow, JW Klop
arXiv preprint arXiv:1201.3786, 2012
42012
Symbolic dynamics and automata theory
FGW Dannenberg
32011
Predicting DNA kinetics with a truncated continuous-time Markov chain method
S Zolaktaf, F Dannenberg, M Schmidt, A Condon, E Winfree
Computational Biology and Chemistry, 107837, 2023
2023
The pathway elaboration method for mean first passage time estimation in large continuous-time Markov chains with applications to nucleic acid kinetics
S Zolaktaf, F Dannenberg, M Schmidt, A Condon, E Winfree
arXiv preprint arXiv:2101.03657, 2021
2021
Folding pathways: DNA origami as a model system
KE Dunn, F Dannenberg, TE Ouldridge, M Kwiatkowska, J Bath, ...
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 44, S67-S67, 2015
2015
Modelling DNA origami self-assembly at the domain level
JN Bath, AJ Turberfield, TO Ouldridge, KE Dunn, F Dannenberg, ...
Journal of Chemical Physics 143 (16), 2015
2015
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