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Daniel Schulz, PhD
Daniel Schulz, PhD
Senior Scientist, University of Zurich
Adresse e-mail validée de uzh.ch
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Année
An immune atlas of clear cell renal cell carcinoma
S Chevrier, JH Levine, VRT Zanotelli, K Silina, D Schulz, M Bacac, ...
Cell 169 (4), 736-749. e18, 2017
8902017
histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data
D Schapiro, HW Jackson, S Raghuraman, JR Fischer, VRT Zanotelli, ...
Nature methods 14 (9), 873-876, 2017
4932017
Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast
C Miller, B Schwalb, K Maier, D Schulz, S Dümcke, B Zacher, A Mayer, ...
Molecular systems biology 7 (1), 458, 2011
4692011
Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation
M Sun, B Schwalb, D Schulz, N Pirkl, S Etzold, L Larivière, KC Maier, ...
Genome research 22 (7), 1350-1359, 2012
3172012
Simultaneous multiplexed imaging of mRNA and proteins with subcellular resolution in breast cancer tissue samples by mass cytometry
D Schulz, VRT Zanotelli, JR Fischer, D Schapiro, S Engler, XK Lun, ...
Cell systems 6 (1), 25-36. e5, 2018
2672018
Transcriptome surveillance by selective termination of noncoding RNA synthesis
D Schulz, B Schwalb, A Kiesel, C Baejen, P Torkler, J Gagneur, J Soeding, ...
Cell 155 (5), 1075-1087, 2013
2642013
Misfolded membrane proteins are specifically recognized by the transmembrane domain of the Hrd1p ubiquitin ligase
BK Sato, D Schulz, PH Do, RY Hampton
Molecular cell 34 (2), 212-222, 2009
2272009
In-depth characterization of monocyte-derived macrophages using a mass cytometry-based phagocytosis assay
D Schulz, Y Severin, VRT Zanotelli, B Bodenmiller
Scientific reports 9 (1), 1925, 2019
1532019
Multiplexed imaging mass cytometry of the chemokine milieus in melanoma characterizes features of the response to immunotherapy
T Hoch, D Schulz, N Eling, JM Gómez, MP Levesque, B Bodenmiller
Science immunology 7 (70), eabk1692, 2022
1142022
An end-to-end workflow for multiplexed image processing and analysis
J Windhager, VRT Zanotelli, D Schulz, L Meyer, M Daniel, B Bodenmiller, ...
Nature Protocols 18 (11), 3565-3613, 2023
572023
Rpb4 subunit functions mainly in mRNA synthesis by RNA polymerase II♦
D Schulz, N Pirkl, E Lehmann, P Cramer
Journal of Biological Chemistry 289 (25), 17446-17452, 2014
512014
Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA)
B Schwalb, D Schulz, M Sun, B Zacher, S Dümcke, DE Martin, P Cramer, ...
Bioinformatics 28 (6), 884-885, 2012
382012
Hair eruption initiates and commensal skin microbiota aggravate adverse events of anti-EGFR therapy
J Klufa, T Bauer, B Hanson, C Herbold, P Starkl, B Lichtenberger, ...
Science translational medicine 11 (522), eaax2693, 2019
292019
Cutaneous and systemic hyperinflammation drives maculopapular drug exanthema in severely ill COVID‐19 patients
Y Mitamura, D Schulz, S Oro, N Li, I Kolm, C Lang, R Ziadlou, G Tan, ...
Allergy 77 (2), 595-608, 2022
242022
Sublinear scaling of the cellular proteome with ploidy
G Yahya, P Menges, PS Amponsah, DA Ngandiri, D Schulz, A Wallek, ...
Nature Communications 13 (1), 6182, 2022
172022
Optimizing multiplexed imaging experimental design through tissue spatial segregation estimation
P Bost, D Schulz, S Engler, C Wasserfall, B Bodenmiller
Nature Methods 20 (3), 418-423, 2023
152023
GenoGAM: genome-wide generalized additive models for ChIP-Seq analysis
G Stricker, A Engelhardt, D Schulz, M Schmid, A Tresch, J Gagneur
Bioinformatics 33 (15), 2258-2265, 2017
82017
Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4+ T-cell Responses in Glioblastoma
J Wang, T Weiss, MC Neidert, NC Toussaint, R Naghavian, ...
Clinical Cancer Research 28 (24), 5368-5382, 2022
62022
Multiplexed Imaging Mass Cytometry of Chemokine Milieus in Metastatic Melanoma Characterizes Features of Response to Immunotherapy
T Hoch, D Schulz, N Eling, JM Gómez, MP Levesque, B Bodenmiller
bioRxiv, 2021.07. 29.454093, 2021
42021
A toolbox enabling a data-driven selection of regions of interest in tumor tissue sections for imaging mass cytometry analysis
D Schulz, S Renaud-Tissot, R Liechti, N Eling, M Daniel, J Windhager, ...
Cancer Research 81 (13_Supplement), 2756-2756, 2021
12021
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