Michal Klein
Michal Klein
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Squidpy: a scalable framework for spatial omics analysis
G Palla, H Spitzer, M Klein, D Fischer, AC Schaar, LB Kuemmerle, ...
Nature methods 19 (2), 171-178, 2022
CellRank for directed single-cell fate mapping
M Lange, V Bergen, M Klein, M Setty, B Reuter, M Bakhti, H Lickert, ...
Nature methods 19 (2), 159-170, 2022
Integrated intra‐and intercellular signaling knowledge for multicellular omics analysis
D Türei, A Valdeolivas, L Gul, N Palacio‐Escat, M Klein, O Ivanova, ...
Molecular systems biology 17 (3), e9923, 2021
Discovering ordinary differential equations that govern time-series
S Becker, M Klein, A Neitz, G Parascandolo, N Kilbertus
arXiv preprint arXiv:2211.02830, 2022
Mapping cells through time and space with moscot
D Klein, G Palla, M Lange, M Klein, Z Piran, M Gander, ...
bioRxiv, 2023.05. 11.540374, 2023
Scalable Pre-training of Large Autoregressive Image Models
A El-Nouby, M Klein, S Zhai, MA Bautista, A Toshev, V Shankar, ...
arXiv preprint arXiv:2401.08541, 2024
Monge, bregman and occam: Interpretable optimal transport in high-dimensions with feature-sparse maps
M Cuturi, M Klein, P Ablin
arXiv preprint arXiv:2302.04065, 2023
Learning costs for structured monge displacements
M Klein, AA Pooladian, P Ablin, E Ndiaye, J Niles-Weed, M Cuturi
arXiv preprint arXiv:2306.11895, 2023
Unified fate mapping in multiview single-cell data
P Weiler, M Lange, M Klein, D Pe'er, F Theis
bioRxiv, 2023.07. 19.549685, 2023
Effect of Opaganib on Supplemental Oxygen and Mortality in Patients with Severe SARS-CoV-2 Pneumonia
F Carvalho Neuenschwander, O Barnett-Griness, S Piconi, Y Maor, ...
medRxiv, 2022.06. 12.22276088, 2022
Unbalanced Low-rank Optimal Transport Solvers
M Scetbon, M Klein, G Palla, M Cuturi
Advances in Neural Information Processing Systems 36, 2024
Mapping lineage-traced cells across time points with moslin
M Lange, Z Piran, M Klein, B Spanjaard, D Klein, JP Junker, FJ Theis, ...
bioRxiv, 2023.04. 14.536867, 2023
Defining and benchmarking open problems in single-cell analysis
M Luecken, S Gigante, D Burkhardt, R Cannoodt, D Strobl, N Markov, ...
Careful with that Scalpel: Improving Gradient Surgery with an EMA
YG Hsieh, J Thornton, E Ndiaye, M Klein, M Cuturi, P Ablin
arXiv preprint arXiv:2402.02998, 2024
Self-Supervised Learning with the Matching Gap
Z Piran, M Klein, J Ramapuram, D Busbridge, S Villar, A Joulin
Effect of Opaganib on Supplemental Oxygen and Mortality in Patients with Severe SARS-CoV-2 Pneumonia (preprint)
FC Neuenschwander, O Barnett-Griness, S Piconi, Y Maor, E Sprinz, ...
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