Sylvain Foissac
Sylvain Foissac
Adresse e-mail validée de inra.fr
TitreCitée parAnnée
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
93502012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
ENCODE Project Consortium
Nature 447 (7146), 799, 2007
49322007
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101, 2012
31952012
Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation
F Ozsolak, P Kapranov, S Foissac, SW Kim, E Fishilevich, AP Monaghan, ...
Cell 143 (6), 1018-1029, 2010
3372010
A combinatorial code for CPE-mediated translational control
M Piqué, JM López, S Foissac, R Guigó, R Méndez
Cell 132 (3), 434-448, 2008
2912008
Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs: Affymetrix/Cold Spring Harbor Laboratory ENCODE Transcriptome Project
K Fejes-Toth, V Sotirova, R Sachidanandam, G Assaf, GJ Hannon, ...
Nature 457 (7232), 1028, 2009
2632009
A general definition and nomenclature for alternative splicing events
M Sammeth, S Foissac, R Guigó
PLoS computational biology 4 (8), e1000147, 2008
2192008
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
F Denoeud, P Kapranov, C Ucla, A Frankish, R Castelo, J Drenkow, ...
Genome research 17 (6), 746-759, 2007
2012007
ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets
S Foissac, M Sammeth
Nucleic acids research 35 (suppl_2), W297-W299, 2007
1622007
Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project
L Andersson, AL Archibald, CD Bottema, R Brauning, SC Burgess, ...
Genome biology 16 (1), 57, 2015
1532015
New class of gene-termini-associated human RNAs suggests a novel RNA copying mechanism
P Kapranov, F Ozsolak, SW Kim, S Foissac, D Lipson, C Hart, S Roels, ...
Nature 466 (7306), 642, 2010
962010
Genome annotation in plants and fungi: EuGene as a model platform
S Foissac, J Gouzy, S Rombauts, C Mathé, J Amselem, L Sterck, ...
Current Bioinformatics 3 (2), 87-97, 2008
962008
Integrating alternative splicing detection into gene prediction
S Foissac, T Schiex
BMC bioinformatics 6 (1), 25, 2005
572005
Evidence for transcript networks composed of chimeric RNAs in human cells
S Djebali, J Lagarde, P Kapranov, V Lacroix, C Borel, JM Mudge, ...
PLoS One 7 (1), e28213, 2012
562012
EUGÈNE'HOM: a generic similarity-based gene finder using multiple homologous sequences
S Foissac, P Bardou, A Moisan, MJ Cros, T Schiex
Nucleic acids research 31 (13), 3742-3745, 2003
532003
An overview of gene expression dynamics during early ovarian folliculogenesis: specificity of follicular compartments and bi-directional dialog
A Bonnet, C Cabau, O Bouchez, J Sarry, N Marsaud, S Foissac, ...
BMC genomics 14 (1), 904, 2013
422013
Efficient targeted transcript discovery via array-based normalization of RACE libraries
S Djebali, P Kapranov, S Foissac, J Lagarde, A Reymond, C Ucla, C Wyss, ...
Nature methods 5 (7), 629, 2008
402008
Long noncoding RNA repertoire in chicken liver and adipose tissue
K Muret, C Klopp, V Wucher, D Esquerré, F Legeai, F Lecerf, C Désert, ...
Genetics Selection Evolution 49 (1), 6, 2017
322017
Bioinformatics pipeline for transcriptome sequencing analysis
S Djebali, V Wucher, S Foissac, C Hitte, E Corre, T Derrien
Enhancer RNAs, 201-219, 2017
112017
Analysis of alternative splicing events in custom gene datasets by AStalavista
S Foissac, M Sammeth
RNA Bioinformatics, 379-392, 2015
82015
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