Haitham Elmarakeby
Haitham Elmarakeby
Dana-Farber Cancer Institute, Broad Institute of MIT & Harvard
Verified email at dfci.harvard.edu - Homepage
Title
Cited by
Cited by
Year
Integrative molecular and clinical modeling of clinical outcomes to PD1 blockade in patients with metastatic melanoma
D Liu, B Schilling, D Liu, A Sucker, E Livingstone, L Jerby-Arnon, ...
Nature medicine 25 (12), 1916-1927, 2019
1502019
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ...
Nature communications 10 (1), 1-17, 2019
1122019
Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis
SK Sieberts, F Zhu, J García-García, E Stahl, A Pratap, G Pandey, ...
Nature communications 7 (1), 1-10, 2016
782016
Genomics of response to immune checkpoint therapies for cancer: implications for precision medicine
JR Conway, E Kofman, SS Mo, H Elmarakeby, E Van Allen
Genome medicine 10 (1), 1-18, 2018
642018
Potential targets of VIVIPAROUS1/ABI3‐LIKE1 (VAL1) repression in developing Arabidopsis thaliana embryos
A Schneider, D Aghamirzaie, H Elmarakeby, AN Poudel, AJ Koo, ...
The Plant Journal 85 (2), 305-319, 2016
392016
Harmonization of tumor mutational burden quantification and association with response to immune checkpoint blockade in non–small-cell lung cancer
NI Vokes, D Liu, B Ricciuti, E Jimenez-Aguilar, H Rizvi, F Dietlein, MX He, ...
JCO precision oncology 3, 1-12, 2019
352019
A Machine Learning Approach to Predict Gene Regulatory Networks in Seed Development in Arabidopsis
LSH Ying Ni, Delasa Aghamirzaie, Haitham Elmarakeby, Eva Collakova, Song Li ...
Frontiers in Plant Science, 2016
352016
Assessment of deep natural language processing in ascertaining oncologic outcomes from radiology reports
KL Kehl, H Elmarakeby, M Nishino, EM Van Allen, EM Lepisto, MJ Hassett, ...
JAMA oncology 5 (10), 1421-1429, 2019
332019
A System to Automatically Classify and Name Any Individual Genome-Sequenced Organism Independently of Current Biological Classification and Nomenclature
BAV Haitham Marakeby, Eman Badr , Hanaa Torkey
PLoS ONE 9 (2), 2014
322014
ATM loss confers greater sensitivity to ATR inhibition than PARP inhibition in prostate cancer
S Rafiei, K Fitzpatrick, D Liu, MY Cai, HA Elmarakeby, J Park, C Ricker, ...
Cancer research 80 (11), 2094-2100, 2020
222020
A proposal for a genome similarity-based taxonomy for plant-pathogenic bacteria that is sufficiently precise to reflect phylogeny, host range, and outbreak affiliation applied …
BA Vinatzer, AJ Weisberg, CL Monteil, HA Elmarakeby, SK Sheppard, ...
Phytopathology 107 (1), 18-28, 2017
182017
A community challenge for inferring genetic predictors of gene essentialities through analysis of a functional screen of cancer cell lines
M Gönen, BA Weir, GS Cowley, F Vazquez, Y Guan, A Jaiswal, ...
Cell systems 5 (5), 485-497. e3, 2017
162017
Similarity-based codes sequentially assigned to ebolavirus genomes are informative of species membership, associated outbreaks, and transmission chains
AJ Weisberg, HA Elmarakeby, LS Heath, BA Vinatzer
Open forum infectious diseases 2 (1), ofv024, 2015
92015
Detection of Pathogenic Variants With Germline Genetic Testing Using Deep Learning vs Standard Methods in Patients With Prostate Cancer and Melanoma
SH AlDubayan, JR Conway, SY Camp, L Witkowski, E Kofman, ...
JAMA 324 (19), 1957-1969, 2020
62020
A generalized object detection system using automatic feature selection
H Al Marakeby, M Zaki, IS Samir
2010 10th International Conference on Intelligent Systems Design and …, 2010
62010
Systematic auditing is essential to debiasing machine learning in biology
FE Eid, HA Elmarakeby, YA Chan, N Fornelos, M ElHefnawi, ...
Communications biology 4 (1), 1-9, 2021
52021
Natural language processing to ascertain cancer outcomes from medical oncologist notes
KL Kehl, W Xu, E Lepisto, H Elmarakeby, MJ Hassett, EM Van Allen, ...
JCO Clinical Cancer Informatics 4, 680-690, 2020
52020
Beacon editor: capturing signal transduction pathways using the systems biology graphical notation activity flow language
H Elmarakeby, M Arefiyan, E Myers, S Li, R Grene, LS Heath
Journal of Computational Biology 24 (12), 1226-1229, 2017
22017
A new exclusively genome-based species-independent taxonomic framework for all life forms applied to Pseudomonas syringae
BA Vinatzer, HA Elmarakeby, AJ Weisberg, CL Monteil, LS Heath
PHYTOPATHOLOGY 105 (11), 143-143, 2015
22015
Biologically informed deep neural network for prostate cancer classification and discovery
HA Elmarakeby, J Hwang, D Liu, SH AlDubayan, K Salari, C Richter, ...
bioRxiv, 2020
12020
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Articles 1–20