Maria Anisimova
Maria Anisimova
Head of Applied Computational Genomics, ZHAW
Adresse e-mail validée de zhaw.ch
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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
S Guindon, JF Dufayard, V Lefort, M Anisimova, W Hordijk, O Gascuel
Systematic biology 59 (3), 307-321, 2010
121812010
Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
M Anisimova, O Gascuel
Systematic biology 55 (4), 539-552, 2006
23392006
Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution
M Anisimova, JP Bielawski, Z Yang
Molecular biology and evolution 18 (8), 1585-1592, 2001
6542001
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes
M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel
Systematic biology 60 (5), 685-699, 2011
5732011
Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites
M Anisimova, R Nielsen, Z Yang
Genetics 164 (3), 1229-1236, 2003
5432003
Accuracy and power of Bayes prediction of amino acid sites under positive selection
M Anisimova, JP Bielawski, Z Yang
Molecular biology and evolution 19 (6), 950-958, 2002
3982002
Morphometric, behavioral, and genomic evidence for a new orangutan species
A Nater, MP Mattle-Greminger, A Nurcahyo, MG Nowak, M De Manuel, ...
Current Biology 27 (22), 3487-3498. e10, 2017
1832017
Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites
M Anisimova, Z Yang
Molecular biology and evolution 24 (5), 1219-1228, 2007
1782007
Investigating protein-coding sequence evolution with probabilistic codon substitution models
M Anisimova, C Kosiol
Molecular biology and evolution 26 (2), 255-271, 2009
1582009
Repertoire, unified nomenclature and evolution of the Type III effector gene set in the Ralstonia solanacearum species complex
N Peeters, S Carrère, M Anisimova, L Plener, AC Cazalé, S Genin
BMC genomics 14 (1), 1-19, 2013
1462013
ALF—A Simulation Framework for Genome Evolution
DA Dalquen, M Anisimova, GH Gonnet, C Dessimoz
Molecular Biology and Evolution, 2011
1382011
CodonPhyML: Fast Maximum Likelihood Phylogeny Estimation under Codon Substitution Models
M Gil, S Zanetti, Marcelo Serrano, Zoller, M Anisimova
Mol Biol Evol, doi:10.1093/molbev/mst029, 2013
922013
Functional diversification of the GALA type III effector family contributes to Ralstonia solanacearum adaptation on different plant hosts
P Remigi, M Anisimova, A Guidot, S Genin, N Peeters
New Phytologist 192 (4), 976-987, 2011
912011
The quest for natural selection in the age of comparative genomics
M Anisimova, DA Liberles
Heredity 99 (6), 567-579, 2007
802007
State-of the art methodologies dictate new standards for phylogenetic analysis
M Anisimova, DA Liberles, H Philippe, J Provan, T Pupko, A Von Haeseler
BMC evolutionary biology 13 (1), 1-8, 2013
612013
Phylogenomic analysis of natural selection pressure in Streptococcus genomes
M Anisimova, J Bielawski, K Dunn, Z Yang
BMC evolutionary biology 7 (1), 1-13, 2007
592007
Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases
OK Tørresen, B Star, P Mier, MA Andrade-Navarro, A Bateman, P Jarnot, ...
Nucleic acids research 47 (21), 10994-11006, 2019
532019
Finding the balance between the mathematical and biological optima in multiple sequence alignment
M Anisimova, G Cannarozzi, DA Liberles
Trends in Evolutionary Biology 2 (1), e7-e7, 2010
51*2010
Deep conservation of human protein tandem repeats within the eukaryotes
E Schaper, O Gascuel, M Anisimova
Molecular biology and evolution 31 (5), 1132-1148, 2014
502014
Measuring codon usage bias
A Roth, M Anisimova, GM Cannarozzi
Codon Evolution: mechanisms and models, 2012
482012
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