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Joanna L. Kelley
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A map of human genome variation from population-scale sequencing
RM Durbin, DL Altshuler, GR Abecasis, DR Bentley, A Chakravarti, ...
Nature 467 (7319), 1061-1073, 2010
8716*2010
Great ape genetic diversity and population history
J Prado-Martinez, PH Sudmant, JM Kidd, H Li, JL Kelley, ...
Nature 499 (7459), 471-475, 2013
9302013
Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions
S Hoban, JL Kelley, KE Lotterhos, MF Antolin, G Bradburd, DB Lowry, ...
The American Naturalist 188 (4), 379-397, 2016
7772016
Classic selective sweeps were rare in recent human evolution
RD Hernandez, JL Kelley, E Elyashiv, SC Melton, A Auton, G McVean, ...
Science 331, 920-924, 2011
5382011
Breaking RAD: an evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation
DB Lowry, S Hoban, JL Kelley, KE Lotterhos, LK Reed, MF Antolin, ...
Molecular ecology resources 17 (2), 142-152, 2017
4052017
Illumina TruSeq Synthetic Long-Reads Empower De Novo Assembly and Resolve Complex, Highly-Repetitive Transposable Elements
RC McCoy, RW Taylor, TA Blauwkamp, JL Kelley, M Kertesz, ...
PloS one 9 (9), e106689, 2014
3162014
Genomic signatures of positive selection in humans and the limits of outlier approaches
JL Kelley, J Madeoy, JC Calhoun, W Swanson, JM Akey
Genome research 16 (8), 980-989, 2006
2502006
Conservation genomics of natural and managed populations: building a conceptual and practical framework
LM Benestan, AL Ferchaud, PA Hohenlohe, BA Garner, GJP Naylor, ...
Molecular ecology 25 (13), 2967-2977, 2016
1792016
Compact genome of the Antarctic midge is likely an adaptation to an extreme environment
JL Kelley, JT Peyton, AS Fiston-Lavier, NM Teets, MC Yee, JS Johnston, ...
Nature communications 5, 4611, 2014
1632014
Gene expression changes governing extreme dehydration tolerance in an Antarctic insect
NM Teets, JT Peyton, H Colinet, D Renault, JL Kelley, Y Kawarasaki, ...
Proceedings of the National Academy of Sciences 109 (50), 20744-20749, 2012
1202012
The Time Scale of Recombination Rate Evolution in Great Apes
LS Stevison, AE Woerner, JM Kidd, JL Kelley, KR Veeramah, ...
Molecular biology and evolution 33 (4), 928-945, 2016
1102016
Toward a genome sequence for every animal: Where are we now?
S Hotaling, JL Kelley, PB Frandsen
Proceedings of the National Academy of Sciences 118 (52), e2109019118, 2021
1022021
Positive selection in the human genome: from genome scans to biological significance
JL Kelley, WJ Swanson
Annu. Rev. Genomics Hum. Genet. 9, 143-160, 2008
1012008
Mechanisms underlying adaptation to life in hydrogen sulfide rich environments
JL Kelley, L Arias-Rodriguez, DP Martin, MC Yee, CD Bustamante, ...
Molecular biology and evolution, msw020, 2016
882016
Parallel evolution of cox genes in H2S-tolerant fish as key adaptation to a toxic environment
M Pfenninger, H Lerp, M Tobler, C Passow, JL Kelley, E Funke, ...
Nature Communications 5, 3873, 2014
852014
The life aquatic: advances in marine vertebrate genomics
JL Kelley, AP Brown, NO Therkildsen, AD Foote
Nature Reviews Genetics 17 (9), 523-534, 2016
832016
Long reads are revolutionizing 20 years of insect genome sequencing
S Hotaling, JS Sproul, J Heckenhauer, A Powell, AM Larracuente, ...
Genome biology and evolution 13 (8), evab138, 2021
822021
Extreme selective sweeps independently targeted the X chromosomes of the great apes
K Nam, K Munch, A Hobolth, JY Dutheil, KR Veeramah, AE Woerner, ...
Proceedings of the National Academy of Sciences 112 (20), 6413-6418, 2015
802015
Adaptive evolution in the SRZ chemoreceptor families of Caenorhabditis elegans and Caenorhabditis briggsae
JH Thomas, JL Kelley, HM Robertson, K Ly, WJ Swanson
Proceedings of the National Academy of Sciences of the United States of …, 2005
732005
Responsible RAD: Striving for best practices in population genomic studies of adaptation
DB Lowry, S Hoban, JL Kelley, KE Lotterhos, LK Reed, MF Antolin, ...
Molecular Ecology Resources, 2017
712017
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