| Identification of protein secretion systems in bacterial genomes SS Abby, J Cury, J Guglielmini, B Néron, M Touchon, EPC Rocha Scientific reports 6 (1), 23080, 2016 | 350* | 2016 |
| The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences M Touchon, J Cury, EJ Yoon, L Krizova, GC Cerqueira, C Murphy, ... Genome biology and evolution 6 (10), 2866-2882, 2014 | 259 | 2014 |
| Identification and analysis of integrons and cassette arrays in bacterial genomes J Cury, T Jové, M Touchon, B Néron, EPC Rocha Nucleic acids research 44 (10), 4539-4550, 2016 | 250 | 2016 |
| Systematic and quantitative view of the antiviral arsenal of prokaryotes F Tesson, A Hervé, E Mordret, M Touchon, C d’Humières, J Cury, ... Nature communications 13 (1), 2561, 2022 | 175 | 2022 |
| The chromosomal organization of horizontal gene transfer in bacteria PH Oliveira, M Touchon, J Cury, EPC Rocha Nature communications 8 (1), 841, 2017 | 174 | 2017 |
| Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain A Perrin, E Larsonneur, AC Nicholson, DJ Edwards, KM Gundlach, ... Nature communications 8 (1), 15483, 2017 | 132 | 2017 |
| Integrative and conjugative elements and their hosts: composition, distribution and organization J Cury, M Touchon, EPC Rocha Nucleic acids research 45 (15), 8943-8956, 2017 | 119 | 2017 |
| Deep learning for population size history inference: Design, comparison and combination with approximate Bayesian computation T Sanchez, J Cury, G Charpiat, F Jay Molecular Ecology Resources 21 (8), 2645-2660, 2021 | 60 | 2021 |
| IntegronFinder 2.0: identification and analysis of integrons across bacteria, with a focus on antibiotic resistance in Klebsiella B Néron, E Littner, M Haudiquet, A Perrin, J Cury, EPC Rocha Microorganisms 10 (4), 700, 2022 | 53 | 2022 |
| Host range and genetic plasticity explain the co-existence of integrative and extrachromosomal mobile genetic elements J Cury, PH Oliveira, F de la Cruz, EPC Rocha Molecular biology and evolution 35 (9), 2230–2239, 2018 | 52 | 2018 |
| A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach C d’Humières, M Touchon, S Dion, J Cury, A Ghozlane, M Garcia-Garcera, ... Scientific Reports 9 (1), 11331, 2019 | 40 | 2019 |
| Identifying Conjugative Plasmids and Integrative Conjugative Elements with CONJscan J Cury, SS Abby, O Doppelt-Azeroual, B Néron, EPC Rocha Horizontal Gene Transfer, 265-283, 2020 | 37 | 2020 |
| Differences in integron cassette excision dynamics shape a trade-off between evolvability and genetic capacitance C Loot, A Nivina, J Cury, JA Escudero, M Ducos-Galand, D Bikard, ... MBio 8 (2), 10.1128/mbio. 02296-16, 2017 | 27* | 2017 |
| Intracellular positioning systems limit the entropic eviction of secondary replicons toward the nucleoid edges in bacterial cells C Planchenault, MC Pons, C Schiavon, P Siguier, J Rech, C Guynet, ... Journal of molecular biology 432 (3), 745-761, 2020 | 18 | 2020 |
| Structure-specific DNA recombination sites: Design, validation, and machine learning–based refinement A Nivina, MS Grieb, C Loot, D Bikard, J Cury, L Shehata, J Bernardes, ... Science advances 6 (30), eaay2922, 2020 | 17 | 2020 |
| Simulation of bacterial populations with SLiM J Cury, BC Haller, G Achaz, F Jay Peer community Journal 2 (e7), 2022 | 11 | 2022 |
| Conservation of antiviral systems across domains of life reveals novel immune mechanisms in humans J Cury, E Mordret, V Hernandez-Trejo, F Tesson, G Ofir, EZ Poirier, ... bioRxiv, 2022.12. 12.520048, 2022 | 9 | 2022 |
| Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ME Lauterbur, MIA Cavassim, AL Gladstein, G Gower, NS Pope, ... Elife 12, RP84874, 2023 | 6 | 2023 |
| dnadna: a deep learning framework for population genetics inference T Sanchez, EM Bray, P Jobic, J Guez, AC Letournel, G Charpiat, J Cury, ... Bioinformatics 39 (1), btac765, 2023 | 5* | 2023 |
| CRISPR-Cas and restriction–modification team up to achieve long-term immunity J Cury, A Bernheim Trends in Microbiology, 2022 | 5 | 2022 |
Eduardo RochaCNRS, Institut PasteurAdresse e-mail validée de pasteur.fr
