Raffaella Rizzi
Raffaella Rizzi
Ricercatore confermato in Informatica, Università degli Studi di Milano-Bicocca
Adresse e-mail validée de disco.unimib.it
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ASPicDB: a database resource for alternative splicing analysis
T Castrignanò, M D’Antonio, A Anselmo, D Carrabino, A D’Onorio De Meo, ...
Bioinformatics 24 (10), 1300-1304, 2008
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences
P Bonizzoni, R Rizzi, G Pesole
BMC bioinformatics 6 (1), 244, 2005
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing
PL Martelli, M D’Antonio, P Bonizzoni, T Castrignano, AM D’Erchia, ...
Nucleic acids research 39 (suppl_1), D80-D85, 2010
Protein Kinase A Activation Promotes Cancer Cell Resistance to Glucose Starvation and Anoikis
R Palorini, G Votta, Y Pirola, H De Vitto, S De Palma, C Airoldi, M Vasso, ...
PLoS genetics 12 (3), e1005931, 2016
Exemplar longest common subsequence
P Bonizzoni, G Della Vedova, R Dondi, G Fertin, R Rizzi, S Vialette
IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (4), 535-543, 2007
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization
T Castrignano, R Rizzi, IG Talamo, PDO De Meo, A Anselmo, P Bonizzoni, ...
Nucleic Acids Research 34 (suppl_2), W440-W443, 2006
Computational methods for alternative splicing prediction.
P Bonizzoni, R Rizzi, G Pesole
Briefings in functional genomics & proteomics 5 (1), 2006
Detecting alternative gene structures from spliced ESTs: a computational approach
P Bonizzoni, G Mauri, G Pesole, E Picardi, Y Pirola, R Rizzi
Journal of computational biology 16 (1), 43-66, 2009
Modeling alternative splicing variants from RNA-Seq data with isoform graphs
S Beretta, P Bonizzoni, GD Vedova, Y Pirola, R Rizzi
Journal of Computational Biology 21 (1), 16-40, 2014
LSG: an external-memory tool to compute string graphs for next-generation sequencing data assembly
P Bonizzoni, GD Vedova, Y Pirola, M Previtali, R Rizzi
Journal of Computational Biology 23 (3), 137-149, 2016
FSG: fast string graph construction for de novo assembly
P Bonizzoni, GD Vedova, Y Pirola, M Previtali, R Rizzi
Journal of computational biology 24 (10), 953-968, 2017
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
L Denti, R Rizzi, S Beretta, G Della Vedova, M Previtali, P Bonizzoni
BMC bioinformatics 19 (1), 444, 2018
An external-memory algorithm for string graph construction
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
Algorithmica 78 (2), 394-424, 2017
Constructing string graphs in external memory
P Bonizzoni, G Della Vedova, Y Pirola, M Previtali, R Rizzi
International Workshop on Algorithms in Bioinformatics, 311-325, 2014
Mapping RNA-seq data to a transcript graph via approximate pattern matching to a hypertext
S Beretta, P Bonizzoni, L Denti, M Previtali, R Rizzi
International Conference on Algorithms for Computational Biology, 49-61, 2017
PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text
Y Pirola, R Rizzi, E Picardi, G Pesole, G Della Vedova, P Bonizzoni
BMC bioinformatics 13 (S5), S2, 2012
A colored graph approach to perfect phylogeny with persistent characters
P Bonizzoni, AP Carrieri, G Della Vedova, R Rizzi, G Trucco
Theoretical Computer Science 658, 60-73, 2017
Joining high-throughput technology with in silico modelling advances genome-wide screening towards targeted discovery
T Werner, PJ Nelson
Briefings in Functional Genomics 5 (1), 32-36, 2006
Divide and conquer computation of the multi-string BWT and LCP array
P Bonizzoni, G Della Vedova, S Nicosia, Y Pirola, M Previtali, R Rizzi
Conference on Computability in Europe, 107-117, 2018
Guideline recommendations for diagnosis and clinical management of Ring14 syndrome—first report of an ad hoc task force
B Rinaldi, A Vaisfeld, S Amarri, C Baldo, G Gobbi, P Magini, E Melli, ...
Orphanet journal of rare diseases 12 (1), 1-11, 2017
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