Vân Anh Huynh-Thu
Vân Anh Huynh-Thu
University of Liège
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Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature Methods, 2012
12422012
Inferring regulatory networks from expression data using tree-based methods
VA Huynh-Thu, A Irrthum, L Wehenkel, P Geurts
PloS one 5 (9), e12776, 2010
7802010
SCENIC: single-cell regulatory network inference and clustering
S Aibar, CB González-Blas, T Moerman, VA Huynh-Thu, H Imrichova, ...
Nature methods 14 (11), 1083, 2017
4742017
MicroRNAs profiling in murine models of acute and chronic asthma: a relationship with mRNAs targets
N Garbacki, E Di Valentin, VA Huynh-Thu, P Geurts, A Irrthum, C Crahay, ...
PLoS One 6 (1), e16509, 2011
1462011
Combining tree-based and dynamical systems for the inference of gene regulatory networks
VA Huynh-Thu, G Sanguinetti
Bioinformatics, btu863, 2015
762015
Identification of a microRNA landscape targeting the PI3K/Akt signaling pathway in inflammation-induced colorectal carcinogenesis
C Josse, N Bouznad, P Geurts, A Irrthum, VA Huynh-Thu, L Servais, ...
American Journal of Physiology-Gastrointestinal and Liver Physiology 306 (3 …, 2014
552014
Statistical interpretation of machine learning-based feature importance scores for biomarker discovery
VA Huynh-Thu, Y Saeys, L Wehenkel, P Geurts
Bioinformatics 28 (13), 1766-1774, 2012
502012
Mapping Gene Regulatory Networks in Drosophila Eye Development by Large-Scale Transcriptome Perturbations and Motif Inference
D Potier, K Davie, G Hulselmans, M Naval Sanchez, L Haagen, ...
Cell reports, 2014
492014
Strand‐specific, high‐resolution mapping of modified RNA polymerase II
L Milligan, VA Huynh‐Thu, C Delan‐Forino, A Tuck, E Petfalski, ...
Molecular systems biology 12 (6), 874, 2016
432016
NIMEFI: Gene Regulatory Network Inference using Multiple Ensemble Feature Importance Algorithms
J Ruyssinck, VA Huynh-Thu, P Geurts, T Dhaene, P Demeester, Y Saeys
PLOS ONE 9 (3), e92709, 2014
402014
dynGENIE3: dynamical GENIE3 for the inference of gene networks from time series expression data
VA Huynh-Thu, P Geurts
Scientific reports 8 (1), 3384, 2018
38*2018
Myelin-derived lipids modulate macrophage activity by liver X receptor activation
JFJ Bogie, S Timmermans, VA Huynh-Thu, A Irrthum, HJM Smeets, ...
PloS one 7 (9), e44998, 2012
342012
Gene regulatory network inference: an introductory survey
VA Huynh-Thu, G Sanguinetti
Gene Regulatory Networks, 1-23, 2019
24*2019
Exploiting tree-based variable importances to selectively identify relevant variables
VA Huynh-Thu, L Wehenkel, P Geurts
JMLR: Workshop and Conference Proceedings 4, 60-73, 2008
19*2008
Bridging physiological and evolutionary time‐scales in a gene regulatory network
G Marchand, VA Huynh‐Thu, NC Kane, S Arribat, D Varès, D Rengel, ...
New Phytologist 203 (2), 685-696, 2014
142014
Gene Regulatory Network Inference from Systems Genetics Data Using Tree-Based Methods
VA Huynh-Thu, L Wehenkel, P Geurts
Gene Network Inference, 63-85, 2013
10*2013
Gene Regulatory Networks
G Sanguinetti, VA Huynh-Thu
Humana Press, 2019
92019
Machine learning-based feature ranking: Statistical interpretation and gene network inference
VA Huynh-Thu
Université de Liège, Liège, Belgium, 2012
92012
Context-dependent feature analysis with random forests
A Sutera, G Louppe, VA Huynh-Thu, L Wehenkel, P Geurts
Uncertainty In Artificial Intelligence: Proceedings of the Thirty-Second …, 2016
42016
Unsupervised Gene Network Inference with Decision Trees and Random Forests
VA Huynh-Thu, P Geurts
Gene Regulatory Networks, 195-215, 2019
2*2019
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