Hai Nguyen

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Coauteurs

Carlos SimmerlingMarsha Laufer Chair in Physical & Quantitative Biology, SUNY Stony BrookAdresse e-mail validée de stonybrook.edu
David A CaseRutgers UniversityAdresse e-mail validée de biomaps.rutgers.edu
Daniel R. RoeLaboratory of Computational Biology, NHLBI, NIHAdresse e-mail validée de nih.gov
He Huang (Agnes)OpenEye Scientific SoftwareAdresse e-mail validée de eyesopen.com
Alexander S. RoseBIOVIA, Dassault Systèmes, San Diego, CAAdresse e-mail validée de weirdbyte.de
Paul JanowskiMachine Learning Engineering Manager, MicrosoftAdresse e-mail validée de microsoft.com
Alberto PerezUniversity of Florida, Department of ChemistryAdresse e-mail validée de chem.ufl.edu
Sagar KhareAssistant Professor of Chemistry and Chemical Biology, Rutgers UniversityAdresse e-mail validée de rutgers.edu
Aliza B. RubensteinPostdoctoral Fellow, Icahn School of Medicine at Mount SinaiAdresse e-mail validée de rutgers.edu
Carlos Xavier HernándezMeta Reality LabsAdresse e-mail validée de fb.com
Asim OkurPostdoctoral Research Fellow, National Institutes of HealthAdresse e-mail validée de nhlbi.nih.gov
Lauren WickstromCUNYAdresse e-mail validée de bmcc.cuny.edu
Yi ShangGeorgia Institute of TechnologyAdresse e-mail validée de gatech.edu
Kenneth M. Merz Jr.University Distinguished Professor and Joseph Zichis Chair in Chemistry, Michigan State UniversityAdresse e-mail validée de msu.edu
Pengfei LiAssistant Professor, Loyola University ChicagoAdresse e-mail validée de luc.edu
Thomas E. Cheatham, IIIProfessor of Medicinal Chemistry; Director Research Computing; University of UtahAdresse e-mail validée de utah.edu
Adrian RoitbergUniversity of Florida, Chemistry DepartmentAdresse e-mail validée de ufl.edu
Joshua T BerrymanUniversity of LuxembourgAdresse e-mail validée de uni.lu
Robin M. Betzinsitro, Inc.Adresse e-mail validée de robinbetz.com
Andreas GoetzSan Diego Supercomputer CenterAdresse e-mail validée de sdsc.edu

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Hai Nguyen

Schrödinger, Inc

Adresse e-mail validée de schrodinger.com - Page d'accueil

Molecular Dynamics Cloud Computing FEP


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
AMBER 2017 DA Case, DS Cerutti, TE Cheatham, III, TA Darden, RE Duke, TJ Giese, ... University of California, San Francisco, 2017	5179*	2017
Improved generalized born solvent model parameters for protein simulations H Nguyen, DR Roe, C Simmerling Journal of chemical theory and computation 9 (4), 2020-2034, 2013	462	2013
Folding simulations for proteins with diverse topologies are accessible in days with a physics-based force field and implicit solvent H Nguyen, J Maier, H Huang, V Perrone, C Simmerling Journal of the American Chemical Society 136 (40), 13959-13962, 2014	234	2014
AmberTools 16 DA Case, RM Betz, W Botello-Smith, DS Cerutti, TE Cheatham III, ... University of California, San Francisco, 2016	141	2016
NGLview–interactive molecular graphics for Jupyter notebooks H Nguyen, DA Case, AS Rose Bioinformatics 34 (7), 1241-1242, 2018	135	2018
Refinement of generalized born implicit solvation parameters for nucleic acids and their complexes with proteins H Nguyen, A Perez, S Bermeo, C Simmerling Journal of chemical theory and computation 11 (8), 3714-3728, 2015	61	2015
AMBER 2016 RE Duke, TJ Giese, H Gohlke, AW Goetz, N Homeyer, S Izadi, P Janowski, ... University of California, San Francisco 1 (3), 2016	58	2016
Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix NW Moriarty, PA Janowski, JM Swails, H Nguyen, JS Richardson, ... Acta Crystallographica Section D: Structural Biology 76 (1), 51-62, 2020	29	2020
ParmEd J Swails, C Hernandez, DL Mobley, H Nguyen, LP Wang, P Janowski URL: https://github. com/ParmEd/ParmEd, 2010	25	2010
Systematic comparison of Amber and Rosetta energy functions for protein structure evaluation AB Rubenstein, K Blacklock, H Nguyen, DA Case, SD Khare Journal of chemical theory and computation 14 (11), 6015-6025, 2018	24	2018
Improving the description of salt bridge strength and geometry in a Generalized Born model Y Shang, H Nguyen, L Wickstrom, A Okur, C Simmerling Journal of Molecular Graphics and Modelling 29 (5), 676-684, 2011	20	2011
AMBER 2015 DA Case, JT Berryman, RM Betz, DS Cerutti, . T.E. Cheatham, III, ... University of California, San Francisco, 2015	3*	2015
PYTRAJ v1.0.0.dev1: Interactive data analysis for molecular dynamics simulations. H Nguyen, DR Roe, J Swails, DA Case http://dx.doi.org/10.5281/zenodo.44612, 2016	2*	2016
A Pareto-optimal approach for protein structure evaluation using Amber and Rosetta energy functions. A Rubenstein, K Blacklock, H Nguyen, D Case, S Khare		2017
AMBER 2016 DA Case, RM Betz, W Botello-Smith, DS Cerutti, TE Cheatham, III, ... University of California, San Francisco, 2016		2016
AMBER 15 University of California, San Francisco, 2015		2015

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