Craig W Duffy
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Genome-Wide Analysis of Selection on the Malaria Parasite Plasmodium falciparum in West African Populations of Differing Infection Endemicity
VA Mobegi, CW Duffy, A Amambua-Ngwa, KM Loua, E Laman, ...
Molecular biology and evolution 31 (6), 1490-1499, 2014
Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi
S Assefa, C Lim, MD Preston, CW Duffy, MB Nair, SA Adroub, KA Kadir, ...
Proceedings of the National Academy of Sciences 112 (42), 13027-13032, 2015
Admixture in Humans of Two Divergent Plasmodium knowlesi Populations Associated with Different Macaque Host Species
PCS Divis, B Singh, F Anderios, S Hisam, A Matusop, CH Kocken, ...
PLoS pathogens 11 (5), e1004888, 2015
Long read assemblies of geographically dispersed Plasmodium falciparum isolates reveal highly structured subtelomeres
TD Otto, U Böhme, M Sanders, A Reid, EI Bruske, CW Duffy, PC Bull, ...
Wellcome Open Research 3, 2018
Checks and balances? DNA replication and the cell cycle in Plasmodium
H Matthews, CW Duffy, CJ Merrick
Parasites & vectors 11 (1), 1-13, 2018
Trypanosoma vivax displays a clonal population structure
CW Duffy, LJ Morrison, A Black, GL Pinchbeck, RM Christley, ...
International journal for parasitology 39 (13), 1475-1483, 2009
Changes in malaria parasite drug resistance in an endemic population over a 25-year period with resulting genomic evidence of selection
DC Nwakanma, CW Duffy, A Amambua-Ngwa, EC Oriero, KA Bojang, ...
The Journal of infectious diseases 209 (7), 1126-1135, 2014
First evidence that parasite infecting apparent aparasitemic serological suspects in human African trypanosomiasis are Trypanosoma brucei gambiense and are similar to those …
J Kabore, M Koffi, B Bucheton, A MacLeod, C Duffy, H Ilboudo, M Camara, ...
Infection, genetics and evolution 11 (6), 1250-1255, 2011
Population genetics of Trypanosoma brucei rhodesiense: clonality and diversity within and between foci
CW Duffy, L MacLean, L Sweeney, A Cooper, CMR Turner, A Tait, ...
PLoS NTD 7 (11), e2526, 2013
Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity
CW Duffy, SA Assefa, J Abugri, N Amoako, S Owusu-Agyei, T Anyorigiya, ...
BMC genomics 16 (1), 1-11, 2015
Widespread distribution of Plasmodium vivax malaria in Mauritania on the interface of the Maghreb and West Africa
H Ba, CW Duffy, AD Ahouidi, YB Deh, MY Diallo, A Tandia, DJ Conway
Malaria journal 15 (1), 1-6, 2016
Microsatellite genotyping and genome-wide single nucleotide polymorphism-based indices of Plasmodium falciparum diversity within clinical infections
L Murray, VA Mobegi, CW Duffy, SA Assefa, DP Kwiatkowski, E Laman, ...
Malaria journal 15 (1), 1-6, 2016
Trypanosome genetics: populations, phenotypes and diversity
A Tait, LJ Morrison, CW Duffy, A Cooper, CMR Turner, A Macleod
Veterinary parasitology 181 (1), 61-68, 2011
Population genetic structure and adaptation of malaria parasites on the edge of endemic distribution
CW Duffy, H Ba, S Assefa, AD Ahouidi, YB Deh, A Tandia, FCM Kirsebom, ...
Molecular ecology 26 (11), 2880-2894, 2017
Applying next-generation sequencing to track falciparum malaria in sub-Saharan Africa
SK Tessema, J Raman, CW Duffy, DS Ishengoma, A Amambua-Ngwa, ...
Malaria journal 18 (1), 1-9, 2019
Multi-population genomic analysis of malaria parasites indicates local selection and differentiation at the gdv1 locus regulating sexual development
CW Duffy, A Amambua-Ngwa, AD Ahouidi, M Diakite, GA Awandare, H Ba, ...
Scientific reports 8 (1), 1-12, 2018
Schizont transcriptome variation among clinical isolates and laboratory-adapted clones of the malaria parasite Plasmodium falciparum
SJ Tarr, O Díaz-Ingelmo, LB Stewart, SE Hocking, L Murray, CW Duffy, ...
BMC genomics 19 (1), 1-13, 2018
Human and animal Trypanosomes in Cote d'Ivoire form a single breeding population
P Capewell, A Cooper, CW Duffy, A Tait, CMR Turner, W Gibson, ...
Plos one 8 (7), e67852, 2013
Population genetic structure of Guinea Trypanosoma brucei gambiense isolates according to host factors
J Kaboré, A MacLeod, V Jamonneau, H Ilboudo, C Duffy, M Camara, ...
Infection, genetics and evolution 11 (5), 1129-1135, 2011
Genome‐wide mosaicism in divergence between zoonotic malaria parasite subpopulations with separate sympatric transmission cycles
PCS Divis, CW Duffy, KA Kadir, B Singh, DJ Conway
Molecular ecology 27 (4), 860-870, 2018
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