Daniel Gautheret
Daniel Gautheret
Professor. Computational Biology, Université Paris-Saclay
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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
D Couvin, A Bernheim, C Toffano-Nioche, M Touchon, J Michalik, ...
Nucleic acids research 46 (W1), W246-W251, 2018
Patterns of variant polyadenylation signal usage in human genes
E Beaudoing, S Freier, JR Wyatt, JM Claverie, D Gautheret
Genome research 10 (7), 1001-1010, 2000
RNAMotif, an RNA secondary structure definition and search algorithm
TJ Macke, DJ Ecker, RR Gutell, D Gautheret, DA Case, R Sampath
Nucleic acids research 29 (22), 4724-4735, 2001
Rfam 14: expanded coverage of metagenomic, viral and microRNA families
I Kalvari, EP Nawrocki, N Ontiveros-Palacios, J Argasinska, K Lamkiewicz, ...
Nucleic Acids Research 49 (D1), D192-D200, 2021
Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles
D Gautheret, A Lambert
Journal of molecular biology 313 (5), 1003-1011, 2001
The genome sequence of the model ascomycete fungus Podospora anserina
E Espagne, O Lespinet, F Malagnac, C Da Silva, O Jaillon, BM Porcel, ...
Genome biology 9, 1-22, 2008
Novel selenoproteins identified in silico andin Vivo by using a conserved RNA structural motif
A Lescure, D Gautheret, P Carbon, A Krol
Journal of Biological Chemistry 274 (53), 38147-38154, 1999
ARNold: a web tool for the prediction of Rho-independent transcription terminators
M Naville, A Ghuillot-Gaudeffroy, A Marchais, D Gautheret
RNA biology 8 (1), 11-13, 2011
Acquired initiating mutations in early hematopoietic cells of CLL patients
F Damm, E Mylonas, A Cosson, K Yoshida, V Della Valle, E Mouly, ...
Cancer discovery 4 (9), 1088-1101, 2014
The Combination of Symbolic and Numerical Computation or Three-Dimensional Modeling of RNA
F Major, M Turcotte, D Gautheret, G Lapalme, E Fillion, R Cedergren
Science 253 (5025), 1255-1260, 1991
Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data
E Beaudoing, D Gautheret
Genome research 11 (9), 1520-1526, 2001
Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism
C Bohn, C Rigoulay, S Chabelskaya, CM Sharma, A Marchais, P Skorski, ...
Nucleic acids research 38 (19), 6620-6636, 2010
Gene structure, expression pattern, and biological activity of mouse killer cell activating receptor-associated protein (KARAP)/DAP-12
E Tomasello, L Olcese, F Vély, C Geourgeon, M Bléry, A Moqrich, ...
Journal of Biological Chemistry 273 (51), 34115-34119, 1998
Alternate polyadenylation in human mRNAs: a large-scale analysis by EST clustering
D Gautheret, O Poirot, F Lopez, S Audic, JM Claverie
Genome research 8 (5), 524-530, 1998
Sequence determinants in human polyadenylation site selection
M Legendre, D Gautheret
BMC genomics 4, 1-9, 2003
RNAML: a standard syntax for exchanging RNA information
A Waugh, P Gendron, R Altman, JW Brown, D Case, D Gautheret, ...
Rna 8 (6), 707-717, 2002
GU base pairing motifs in ribosomal RNA.
D Gautheret, D Konings, RR Gutell
Rna 1 (8), 807-814, 1995
A major family of motifs involving G? A mismatches in ribosomal RNA
D Gautheret, D Konings, RR Gutell
Journal of molecular biology 242 (1), 1-8, 1994
Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA
D Gautheret, F Major, R Cedergren
Bioinformatics 6 (4), 325-331, 1990
Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
CJ Chen, Q Liu, YC Zhang, LH Qu, YQ Chen, D Gautheret
RNA biology 8 (3), 538-547, 2011
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