Olivier Gascuel
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A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
S Guindon, O Gascuel
Systematic biology 52 (5), 696-704, 2003
172442003
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
S Guindon, JF Dufayard, V Lefort, M Anisimova, W Hordijk, O Gascuel
Systematic biology 59 (3), 307-321, 2010
126542010
SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building
M Gouy, S Guindon, O Gascuel
Molecular biology and evolution 27 (2), 221-224, 2010
48812010
Phylogeny. fr: robust phylogenetic analysis for the non-specialist
A Dereeper, V Guignon, G Blanc, S Audic, S Buffet, F Chevenet, ...
Nucleic acids research 36 (suppl_2), W465-W469, 2008
43632008
Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
M Anisimova, O Gascuel
Systematic biology 55 (4), 539-552, 2006
23752006
An improved general amino acid replacement matrix
SQ Le, O Gascuel
Molecular biology and evolution 25 (7), 1307-1320, 2008
22962008
BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data.
O Gascuel
Molecular biology and evolution 14 (7), 685-695, 1997
18811997
PHYML Online—a web server for fast maximum likelihood-based phylogenetic inference
S Guindon, F Lethiec, P Duroux, O Gascuel
Nucleic acids research 33 (suppl_2), W557-W559, 2005
15002005
SMS: smart model selection in PhyML
V Lefort, JE Longueville, O Gascuel
Molecular biology and evolution 34 (9), 2422-2424, 2017
9262017
Estimating maximum likelihood phylogenies with PhyML
S Guindon, F Delsuc, JF Dufayard, O Gascuel
Bioinformatics for DNA sequence analysis, 113-137, 2009
7482009
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes
M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel
Systematic biology 60 (5), 685-699, 2011
6172011
Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle
R Desper, O Gascuel
International Workshop on Algorithms in Bioinformatics, 357-374, 2002
5092002
FastME 2.0: a comprehensive, accurate, and fast distance-based phylogeny inference program
V Lefort, R Desper, O Gascuel
Molecular biology and evolution 32 (10), 2798-2800, 2015
4712015
Neighbor-joining revealed
O Gascuel, M Steel
Molecular biology and evolution 23 (11), 1997-2000, 2006
3412006
Theoretical foundation of the balanced minimum evolution method of phylogenetic inference and its relationship to weighted least-squares tree fitting
R Desper, O Gascuel
Molecular Biology and Evolution 21 (3), 587-598, 2004
2382004
Empirical profile mixture models for phylogenetic reconstruction
L Si Quang, O Gascuel, N Lartillot
Bioinformatics 24 (20), 2317-2323, 2008
2182008
Renewing Felsenstein’s phylogenetic bootstrap in the era of big data
F Lemoine, JBD Entfellner, E Wilkinson, D Correia, MD Felipe, ...
Nature 556 (7702), 452-456, 2018
2082018
Fast dating using least-squares criteria and algorithms
TH To, M Jung, S Lycett, O Gascuel
Systematic biology 65 (1), 82-97, 2016
2052016
Identification of novel peptide hormones in the human proteome by hidden Markov model screening
O Mirabeau, E Perlas, C Severini, E Audero, O Gascuel, R Possenti, ...
Genome research 17 (3), 320-327, 2007
2022007
Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood
W Hordijk, O Gascuel
Bioinformatics 21 (24), 4338-4347, 2005
2012005
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