| A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood S Guindon, O Gascuel Systematic biology 52 (5), 696-704, 2003 | 17070 | 2003 |
| New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0 S Guindon, JF Dufayard, V Lefort, M Anisimova, W Hordijk, O Gascuel Systematic biology 59 (3), 307-321, 2010 | 12315 | 2010 |
| SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building M Gouy, S Guindon, O Gascuel Molecular biology and evolution 27 (2), 221-224, 2010 | 4776 | 2010 |
| Phylogeny. fr: robust phylogenetic analysis for the non-specialist A Dereeper, V Guignon, G Blanc, S Audic, S Buffet, F Chevenet, ... Nucleic acids research 36 (suppl_2), W465-W469, 2008 | 4251 | 2008 |
| Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative M Anisimova, O Gascuel Systematic biology 55 (4), 539-552, 2006 | 2354 | 2006 |
| An improved general amino acid replacement matrix SQ Le, O Gascuel Molecular biology and evolution 25 (7), 1307-1320, 2008 | 2248 | 2008 |
| BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. O Gascuel Molecular biology and evolution 14 (7), 685-695, 1997 | 1851 | 1997 |
| PHYML Online—a web server for fast maximum likelihood-based phylogenetic inference S Guindon, F Lethiec, P Duroux, O Gascuel Nucleic acids research 33 (suppl_2), W557-W559, 2005 | 1485 | 2005 |
| SMS: smart model selection in PhyML V Lefort, JE Longueville, O Gascuel Molecular biology and evolution 34 (9), 2422-2424, 2017 | 861 | 2017 |
| Estimating maximum likelihood phylogenies with PhyML S Guindon, F Delsuc, JF Dufayard, O Gascuel Bioinformatics for DNA sequence analysis, 113-137, 2009 | 735 | 2009 |
| Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel Systematic biology 60 (5), 685-699, 2011 | 584 | 2011 |
| Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle R Desper, O Gascuel International Workshop on Algorithms in Bioinformatics, 357-374, 2002 | 504 | 2002 |
| FastME 2.0: a comprehensive, accurate, and fast distance-based phylogeny inference program V Lefort, R Desper, O Gascuel Molecular biology and evolution 32 (10), 2798-2800, 2015 | 435 | 2015 |
| Neighbor-joining revealed O Gascuel, M Steel Molecular biology and evolution 23 (11), 1997-2000, 2006 | 337 | 2006 |
| Theoretical foundation of the balanced minimum evolution method of phylogenetic inference and its relationship to weighted least-squares tree fitting R Desper, O Gascuel Molecular Biology and Evolution 21 (3), 587-598, 2004 | 232 | 2004 |
| Empirical profile mixture models for phylogenetic reconstruction L Si Quang, O Gascuel, N Lartillot Bioinformatics 24 (20), 2317-2323, 2008 | 209 | 2008 |
| Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood W Hordijk, O Gascuel Bioinformatics 21 (24), 4338-4347, 2005 | 199 | 2005 |
| Fast dating using least-squares criteria and algorithms TH To, M Jung, S Lycett, O Gascuel Systematic biology 65 (1), 82-97, 2016 | 191 | 2016 |
| Identification of novel peptide hormones in the human proteome by hidden Markov model screening O Mirabeau, E Perlas, C Severini, E Audero, O Gascuel, R Possenti, ... Genome research 17 (3), 320-327, 2007 | 191 | 2007 |
| Renewing Felsenstein’s phylogenetic bootstrap in the era of big data F Lemoine, JBD Entfellner, E Wilkinson, D Correia, MD Felipe, ... Nature 556 (7702), 452-456, 2018 | 189 | 2018 |
Stephane GuindonCNRS, Montpellier, FranceVerified email at lirmm.fr
