| CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences EFO Sandes, ACMA de Melo Proceedings of the 15th ACM SIGPLAN symposium on Principles and practice of …, 2010 | 75 | 2010 |
| Retrieving smith-waterman alignments with optimizations for megabase biological sequences using GPU EFO Sandes, ACMA de Melo IEEE Transactions on Parallel and Distributed Systems 24 (5), 1009-1021, 2012 | 70 | 2012 |
| Smith-waterman alignment of huge sequences with gpu in linear space EFO Sandes, ACMA de Melo 2011 IEEE International Parallel & Distributed Processing Symposium, 1199-1211, 2011 | 61 | 2011 |
| A parallel strategy for biological sequence alignment in restricted memory space RB Batista, A Boukerche, ACMA de Melo Journal of Parallel and Distributed Computing 68 (4), 548-561, 2008 | 46 | 2008 |
| A hardware accelerator for the fast retrieval of DIALIGN biological sequence alignments in linear space A Boukerche, JM Correa, ACM Melo, RP Jacobi IEEE Transactions on Computers 59 (6), 808-821, 2010 | 40 | 2010 |
| Cudalign 4.0: Incremental speculative traceback for exact chromosome-wide alignment in gpu clusters EF de Oliveira Sandes, G Miranda, X Martorell, E Ayguade, G Teodoro, ... IEEE Transactions on Parallel and Distributed Systems 27 (10), 2838-2850, 2016 | 38 | 2016 |
| An extensible resource discovery mechanism for grid computing environments TG Ramos, ACMA de Melo Sixth IEEE International Symposium on Cluster Computing and the Grid (CCGRID …, 2006 | 35 | 2006 |
| Parallel strategies for local biological sequence alignment in a cluster of workstations A Boukerche, ACMA de Melo, M Ayala-Rincón 19th IEEE International Parallel and Distributed Processing Symposium, 8 pp., 2005 | 35* | 2005 |
| CUDAlign 3.0: Parallel biological sequence comparison in large GPU clusters FO Edans, G Miranda, ACMA de Melo, X Martorell, E Ayguadé 2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2014 | 30 | 2014 |
| Automating Resource Selection and Configuration in Inter-clouds through a Software Product Line Method AF Leite, V Alves, R G. N., T C., E C., ACMA Melo IEEE Society, 2015 | 28 | 2015 |
| Parallel smith-waterman comparison on multicore and manycore computing platforms with BSP++ K Hamidouche, FM Mendonca, J Falcou, ACMA de Melo, D Etiemble International Journal of Parallel Programming 41 (1), 111-136, 2013 | 24 | 2013 |
| An exact parallel algorithm to compare very long biological sequences in clusters of workstations A Boukerche, ACMA de Melo, EF de Oliveira Sandes, M Ayala-Rincon Cluster Computing 10 (2), 187-202, 2007 | 24 | 2007 |
| Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment D Sundfeld, JH Havgaard, ACMA de Melo, J Gorodkin Bioinformatics 32 (8), 1238-1240, 2016 | 23 | 2016 |
| Parallel optimal pairwise biological sequence comparison: Algorithms, platforms, and classification EFDO Sandes, A Boukerche, ACMAD Melo ACM Computing Surveys (CSUR) 48 (4), 1-36, 2016 | 22 | 2016 |
| Defining Uniform and Hybrid Memory Consistency Models on a Unified Framework ACMAM Melo HICSS-32 - Proceedings of the 32nd Annual Hawaii International Conference …, 1999 | 21 | 1999 |
| Algorithm sensitivity analysis and parameter tuning for tissue image segmentation pipelines G Teodoro, TM Kurç, LFR Taveira, ACMA Melo, Y Gao, J Kong, JH Saltz Bioinformatics 33 (7), 1064-1072, 2017 | 20 | 2017 |
| Comparing two long biological sequences using a dsm system RCF Melo, MET Walter, ACMA Melo, R Batista, M Nardelli, T Martins, ... European Conference on Parallel Processing, 517-524, 2003 | 20 | 2003 |
| MASA: a multiplatform architecture for sequence aligners with block pruning EF De O. Sandes, G Miranda, X Martorell, E Ayguade, G Teodoro, ... ACM Transactions on Parallel Computing (TOPC) 2 (4), 1-31, 2016 | 19 | 2016 |
| Logical model of relationship for online social networks and performance optimizing of queries EFO De Sandes, L Weigang, ACMA de Melo International Conference on Web Information Systems Engineering, 726-736, 2012 | 17 | 2012 |
| Statistical analysis of Amazon EC2 cloud pricing models G Portella, GN Rodrigues, E Nakano, ACMA Melo Concurrency and Computation: Practice and Experience 31 (18), e4451, 2019 | 16 | 2019 |
Azzedine BoukercheDistinguished University Professor and Senior Canada Research Chair Tier-1; FIEEE, FEiC, FCAE, FAAASVerified email at site.uottawa.ca
