| CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences EFO Sandes, ACMA de Melo Proceedings of the 15th ACM SIGPLAN symposium on Principles and practice of …, 2010 | 93 | 2010 |
| Retrieving smith-waterman alignments with optimizations for megabase biological sequences using GPU EFO Sandes, ACMA de Melo IEEE Transactions on Parallel and Distributed Systems 24 (5), 1009-1021, 2012 | 91 | 2012 |
| CUDAlign 4.0: Incremental speculative traceback for exact chromosome-wide alignment in GPU clusters EF de Oliveira Sandes, G Miranda, X Martorell, E Ayguade, G Teodoro, ... IEEE Transactions on Parallel and Distributed Systems 27 (10), 2838-2850, 2016 | 80 | 2016 |
| Smith-waterman alignment of huge sequences with gpu in linear space EFO Sandes, ACMA de Melo 2011 IEEE International Parallel & Distributed Processing Symposium, 1199-1211, 2011 | 68 | 2011 |
| A parallel strategy for biological sequence alignment in restricted memory space RB Batista, A Boukerche, ACMA de Melo Journal of Parallel and Distributed Computing 68 (4), 548-561, 2008 | 58 | 2008 |
| A hardware accelerator for the fast retrieval of DIALIGN biological sequence alignments in linear space A Boukerche, JM Correa, ACM Melo, RP Jacobi IEEE Transactions on Computers 59 (6), 808-821, 2010 | 46 | 2010 |
| Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment D Sundfeld, JH Havgaard, ACMA de Melo, J Gorodkin Bioinformatics 32 (8), 1238-1240, 2016 | 45 | 2016 |
| CUDAlign 3.0: Parallel biological sequence comparison in large GPU clusters EFO Sandes, G Miranda, ACMA de Melo, X Martorell, E Ayguadé 2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2014 | 42 | 2014 |
| Statistical analysis of Amazon EC2 cloud pricing models G Portella, GN Rodrigues, E Nakano, ACMA Melo Concurrency and Computation: Practice and Experience 31 (18), e4451, 2019 | 38 | 2019 |
| Parallel strategies for local biological sequence alignment in a cluster of workstations A Boukerche, ACMA de Melo, M Ayala-Rincón 19th IEEE International Parallel and Distributed Processing Symposium, 8 pp., 2005 | 38 | 2005 |
| Algorithm sensitivity analysis and parameter tuning for tissue image segmentation pipelines G Teodoro, TM Kurç, LFR Taveira, ACMA Melo, Y Gao, J Kong, JH Saltz Bioinformatics 33 (7), 1064-1072, 2017 | 37 | 2017 |
| An extensible resource discovery mechanism for grid computing environments TG Ramos, ACMA de Melo Sixth IEEE International Symposium on Cluster Computing and the Grid (CCGRID …, 2006 | 36 | 2006 |
| Multiagent system for dynamic resource provisioning in cloud computing platforms CG Ralha, AHD Mendes, LA Laranjeira, APF Araújo, ACMA Melo Future generation computer systems 94, 80-96, 2019 | 34 | 2019 |
| Parallel optimal pairwise biological sequence comparison: Algorithms, platforms, and classification EFDO Sandes, A Boukerche, ACMAD Melo ACM Computing Surveys (CSUR) 48 (4), 1-36, 2016 | 34 | 2016 |
| MASA: A multiplatform architecture for sequence aligners with block pruning EF De O. Sandes, G Miranda, X Martorell, E Ayguade, G Teodoro, ... ACM Transactions on Parallel Computing (TOPC) 2 (4), 1-31, 2016 | 33 | 2016 |
| Automating Resource Selection and Configuration in Inter-clouds through a Software Product Line Method AF Leite, V Alves, R G. N., T C., E C., ACMA Melo IEEE Society, 2015 | 33 | 2015 |
| Parallel smith-waterman comparison on multicore and manycore computing platforms with BSP++ K Hamidouche, FM Mendonca, J Falcou, ACMA de Melo, D Etiemble International Journal of Parallel Programming 41, 111-136, 2013 | 24 | 2013 |
| An exact parallel algorithm to compare very long biological sequences in clusters of workstations A Boukerche, ACMA de Melo, EFO Sandes, M Ayala-Rincon Cluster Computing 10, 187-202, 2007 | 24 | 2007 |
| Comparing two long biological sequences using a dsm system RCF Melo, MET Walter, ACMA Melo, R Batista, M Nardelli, T Martins, ... Euro-Par 2003 Parallel Processing: 9th International Euro-Par Conference …, 2003 | 24 | 2003 |
| Defining Uniform and Hybrid Memory Consistency Models on a Unified Framework ACMAM Melo HICSS-32 - Proceedings of the 32nd Annual Hawaii International Conference …, 1999 | 23 | 1999 |
Azzedine BoukercheDistinguished University Professor and Senior Canada Research Chair; FIEEE, FEiC, FCAE, FAAAS, FAAIAVerified email at site.uottawa.ca
