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Vasanth Singan
Vasanth Singan
Bioinformatics Scientist, Ambry Genetics
Verified email at ambrygen.com
Title
Cited by
Cited by
Year
Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica
DW Udwary, L Zeigler, RN Asolkar, V Singan, A Lapidus, W Fenical, ...
Proceedings of the National Academy of Sciences 104 (25), 10376-10381, 2007
5912007
Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells
C Stadler, E Rexhepaj, VR Singan, RF Murphy, R Pepperkok, M UhlÚn, ...
Nature methods 10 (4), 315-323, 2013
2422013
Genome-wide RNAi screening identifies human proteins with a regulatory function in the early secretory pathway
JC Simpson, B Joggerst, V Laketa, F Verissimo, C Cetin, H Erfle, ...
Nature cell biology 14 (7), 764-774, 2012
1922012
wFleaBase: the Daphnia genome database
JK Colbourne, VR Singan, DG Gilbert
BMC bioinformatics 6 (1), 1-5, 2005
1542005
Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses
B Schwessinger, O Bahar, N Thomas, N Holton, V Nekrasov, D Ruan, ...
PLoS pathogens 11 (3), e1004809, 2015
1082015
Fungal and plant gene expression in the Tulasnella calosporaSerapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas
V Fochi, W Chitarra, A Kohler, S Voyron, VR Singan, EA Lindquist, ...
New Phytologist 213 (1), 365-379, 2017
902017
Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses
N Varoquaux, B Cole, C Gao, G Pierroz, CR Baker, D Patel, M Madera, ...
Proceedings of the National Academy of Sciences 116 (52), 27124-27132, 2019
862019
Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics
C Gao, L Montoya, L Xu, M Madera, J Hollingsworth, E Purdom, V Singan, ...
Nature communications 11 (1), 1-14, 2020
792020
Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT 2 in caffeoylquinic acid biosynthesis and its regulation by defenseá…
J Zhang, Y Yang, K Zheng, M Xie, K Feng, SS Jawdy, LE Gunter, ...
New Phytologist 220 (2), 502-516, 2018
682018
Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass
JT Lovell, AH MacQueen, S Mamidi, J Bonnette, J Jenkins, JD Napier, ...
Nature 590 (7846), 438-444, 2021
642021
Insights of biomass recalcitrance in natural Populus trichocarpa variants for biomass conversion
CG Yoo, Y Yang, Y Pu, X Meng, W Muchero, KL Yee, OA Thompson, ...
Green Chemistry 19 (22), 5467-5478, 2017
632017
Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant–cyanobacteria symbiosis
D Warshan, JL Espinoza, RK Stuart, RA Richter, SY Kim, N Shapiro, ...
The ISME journal 11 (12), 2821-2833, 2017
532017
A 5-Enolpyruvylshikimate 3-Phosphate Synthase Functions as a Transcriptional Repressor in Populus
M Xie, W Muchero, AC Bryan, K Yee, HB Guo, J Zhang, TJ Tschaplinski, ...
The Plant Cell 30 (7), 1645-1660, 2018
452018
Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant–pathogen interactions in a tree
W Muchero, KL Sondreli, JG Chen, BR Urbanowicz, J Zhang, V Singan, ...
Proceedings of the National Academy of Sciences 115 (45), 11573-11578, 2018
402018
A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism
Y Xiong, VW Wu, A Lubbe, L Qin, S Deng, M Kennedy, D Bauer, ...
PLoS genetics 13 (5), e1006737, 2017
392017
Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale
D Banerjee, T Eng, AK Lau, Y Sasaki, B Wang, Y Chen, JP Prahl, ...
Nature communications 11 (1), 1-11, 2020
332020
The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus
VW Wu, N Thieme, LB Huberman, A Dietschmann, DJ Kowbel, J Lee, ...
Proceedings of the National Academy of Sciences 117 (11), 6003-6013, 2020
302020
Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors
SP Gordon, B Contreras-Moreira, JJ Levy, A Djamei, A Czedik-Eysenberg, ...
Nature communications 11 (1), 1-16, 2020
262020
Dual channel rank-based intensity weighting for quantitative co-localization of microscopy images
VR Singan, TR Jones, KM Curran, JC Simpson
BMC bioinformatics 12 (1), 1-15, 2011
232011
Dichomitus squalens partially tailors its molecular responses to the composition of solid wood
P Daly, SC Lˇpez, M Peng, CS Lancefield, SO Purvine, YM Kim, EM Zink, ...
Environmental microbiology 20 (11), 4141-4156, 2018
212018
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