| VSEARCH: a versatile open source tool for metagenomics T Rognes, T Flouri, B Nichols, C Quince, F Mahé PeerJ 4, e2584, 2016 | 2693 | 2016 |
| Eukaryotic plankton diversity in the sunlit ocean C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ... Science 348 (6237), 2015 | 985 | 2015 |
| The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy L Guillou, D Bachar, S Audic, D Bass, C Berney, L Bittner, C Boutte, ... Nucleic acids research 41 (D1), D597-D604, 2012 | 617 | 2012 |
| Swarm: robust and fast clustering method for amplicon-based studies F Mahé, T Rognes, C Quince, C de Vargas, M Dunthorn PeerJ 2, e593, 2014 | 507 | 2014 |
| Patterns of rare and abundant marine microbial eukaryotes R Logares, S Audic, D Bass, L Bittner, C Boutte, R Christen, JM Claverie, ... Current Biology 24 (8), 813-821, 2014 | 292 | 2014 |
| Swarm v2: highly-scalable and high-resolution amplicon clustering F Mahé, T Rognes, C Quince, C de Vargas, M Dunthorn PeerJ 3, e1420, 2015 | 253 | 2015 |
| Marine protist diversity in E uropean coastal waters and sediments as revealed by high‐throughput sequencing R Massana, A Gobet, S Audic, D Bass, L Bittner, C Boutte, A Chambouvet, ... Environmental microbiology 17 (10), 4035-4049, 2015 | 236 | 2015 |
| Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests F Mahé, C de Vargas, D Bass, L Czech, A Stamatakis, E Lara, D Singer, ... Nature Ecology & Evolution 1 (4), 0091, 2017 | 117 | 2017 |
| Molecular diversity and distribution of marine fungi across 130 European environmental samples TA Richards, G Leonard, F Mahé, J del Campo, S Romac, MDM Jones, ... Proceedings of the Royal Society B: Biological Sciences 282 (1819), 20152243, 2015 | 102 | 2015 |
| Open-source sequence clustering methods improve the state of the art E Kopylova, JA Navas-Molina, C Mercier, ZZ Xu, F Mahé, Y He, HW Zhou, ... MSystems 1 (1), 2016 | 92 | 2016 |
| Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context M Dunthorn, J Otto, SA Berger, A Stamatakis, F Mahé, S Romac, ... Molecular biology and evolution 31 (4), 993-1009, 2014 | 73 | 2014 |
| Is the distribution of Prochlorococcus and Synechococcus ecotypes in the Mediterranean Sea affected by global warming? D Mella-Flores, S Mazard, C Jeanthon, EM Bendif, M Ostrowski, ... Copernicus Publications, 2011 | 73 | 2011 |
| Vampires in the oceans: predatory cercozoan amoebae in marine habitats C Berney, S Romac, F Mahé, S Santini, R Siano, D Bass The ISME journal 7 (12), 2387-2399, 2013 | 65 | 2013 |
| Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding N Le Bescot, F Mahé, S Audic, C Dimier, MJ Garet, J Poulain, P Wincker, ... Environmental Microbiology 18 (2), 609-626, 2016 | 57 | 2016 |
| Clarifying the relationships between microsporidia and cryptomycota D Bass, L Czech, BAP Williams, C Berney, M Dunthorn, F Mahé, ... Journal of Eukaryotic Microbiology 65 (6), 773-782, 2018 | 55 | 2018 |
| Intracellular diversity of the V4 and V9 regions of the 18S rRNA in marine protists (radiolarians) assessed by high-throughput sequencing J Decelle, S Romac, E Sasaki, F Not, F Mahe PloS one 9 (8), e104297, 2014 | 54 | 2014 |
| Molecular phylogeny and morphological evolution of the Acantharia (Radiolaria) J Decelle, N Suzuki, F Mahé, C de Vargas, F Not Protist 163 (3), 435-450, 2012 | 53 | 2012 |
| Diversity, ecology and biogeochemistry of cyst-forming Acantharia (Radiolaria) in the oceans J Decelle, P Martin, K Paborstava, DW Pond, G Tarling, F Mahé, ... PLoS One 8 (1), e53598, 2013 | 52 | 2013 |
| Global trends in marine plankton diversity across kingdoms of life FM Ibarbalz, N Henry, MC Brandão, S Martini, G Busseni, H Byrne, ... Cell 179 (5), 1084-1097. e21, 2019 | 48 | 2019 |
| Comparing High‐throughput Platforms for Sequencing the V4 Region of SSU‐r DNA in Environmental Microbial Eukaryotic Diversity Surveys F Mahé, J Mayor, J Bunge, J Chi, T Siemensmeyer, T Stoeck, B Wahl, ... Journal of Eukaryotic Microbiology 62 (3), 338-345, 2015 | 48 | 2015 |
Micah DunthornEukaryotic Microbiology, University of Duisburg-EssenVerified email at uni-due.de
