Andrew Thrasher
Andrew Thrasher
Senior Bioinformatics Software Engineer at St. Jude Children's Research Hospital
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VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics
K Megy, SJ Emrich, D Lawson, D Campbell, E Dialynas, DST Hughes, ...
Nucleic Acids Research, 2011
Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome
M Rusch, J Nakitandwe, S Shurtleff, S Newman, Z Zhang, MN Edmonson, ...
Nature communications 9 (1), 1-13, 2018
Genetic risk for subsequent neoplasms among long-term survivors of childhood cancer
Z Wang, CL Wilson, J Easton, A Thrasher, H Mulder, Q Liu, DJ Hedges, ...
Journal of Clinical Oncology 36 (20), 2078, 2018
Harnessing parallelism in multicore clusters with the all-pairs, wavefront, and makeflow abstractions
L Yu, C Moretti, A Thrasher, S Emrich, K Judd, D Thain
Cluster Computing 13 (3), 243-256, 2010
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data
L Tian, Y Li, MN Edmonson, X Zhou, S Newman, C McLeod, A Thrasher, ...
Genome biology 21, 1-18, 2020
A framework for scalable genome assembly on clusters, clouds, and grids
C Moretti, A Thrasher, L Yu, M Olson, S Emrich, D Thain
IEEE Transactions on Parallel and Distributed Systems 23 (12), 2189-2197, 2012
Taming complex bioinformatics workflows with Weaver, Makeflow, and Starch
A Thrasher, R Carmichael, P Bui, L Yu, D Thain, S Emrich
The 5th Workshop on Workflows in Support of Large-Scale Science, 1-6, 2010
Scaling up genome annotation using MAKER and work queue
A Thrasher, Z Musgrave, B Kachmarck, D Thain, S Emrich
International Journal of Bioinformatics Research and Applications 2 10 (4-5 …, 2014
Scripting distributed scientific workflows using Weaver
P Bui, L Yu, A Thrasher, R Carmichael, I Lanc, P Donnelly, D Thain
Concurrency and Computation: Practice and Experience 24 (15), 1685-1707, 2012
St. Jude Cloud: A Pediatric Cancer Genomic Data-Sharing Ecosystem
C McLeod, AM Gout, X Zhou, A Thrasher, D Rahbarinia, SW Brady, ...
Cancer Discovery 11 (5), 1082-1099, 2021
Case Studies in Designing Elastic Applications
D Rajan, A Thrasher, JAI Badi’Abdul-Wahid, S Emrich, D Thain
CCGrid2013 the 13th IEEE/ACM International Symposium on Cluster, Cloud and …, 2013
Shifting the Bioinformatics Computing Paradigm: A Case Study using Genome
A Thrasher, Z Musgrave, D Thain, S Emrich
Computational Advances in Bio and Medical Sciences (ICCABS), 2012 IEEE 2nd …, 2012
Shifting the Bioinformatics Computing Paradigm: A Case Study in Parallelizing Genome Annotation Using MAKER and Work Queue
A Thrasher, Z Musgrave, D Thain, S Emrich
International Conference on Computational Advances in Bio and Medical …, 2012
MethylationToActivity: a deep-learning framework that reveals promoter activity landscapes from DNA methylomes in individual tumors
J Williams, B Xu, D Putnam, A Thrasher, C Li, J Yang, X Chen
Genome biology 22 (1), 1-27, 2021
Genomes for Kids: The scope of pathogenic mutations in pediatric cancer revealed by comprehensive DNA and RNA sequencing
S Newman, J Nakitandwe, CA Kesserwan, EM Azzato, DA Wheeler, ...
Cancer Discovery, 2021
XenoCP: Cloud-based BAM cleansing tool for RNA and DNA from Xenograft
M Rusch, L Ding, S Arunachalam, A Thrasher, H Jin, M Macias, L Kasper, ...
bioRxiv, 843250, 2020
Precision medicine for sickle cell disease through whole genome sequencing
E Rampersaud, LE Palmer, JS Hankins, VA Sheehan, W Bi, H Mulder, ...
Blood 132 (Supplement 1), 3641-3641, 2018
Germline mutations in cancer predisposition genes and risk for subsequent neoplasms among long-term survivors of childhood cancer in the St. Jude Lifetime Cohort
Z Wang, CL Wilson, J Easton, D Hedges, Q Liu, G Wu, M Rusch, ...
Cancer Research 77 (13 Supplement), 3001-3001, 2017
A polygenic score for acute vaso-occlusive pain in pediatric sickle cell disease
E Rampersaud, G Kang, LE Palmer, SR Rashkin, S Wang, W Bi, ...
Blood Advances 5 (14), 2839-2851, 2021
Empowering point-and-click genomic analysis with large pediatric genomic reference data on St. Jude Cloud
A Thrasher, M Macias, AM Gout, D Rahbarinia, X Zhou, SW Brady, ...
Cancer Research 81 (13 Supplement), 2289-2289, 2021
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