Emmanuelle Lerat
Emmanuelle Lerat
Lab. Biometrie et Biologie Evolutive - Université Lyon 1
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From gene trees to organismal phylogeny in prokaryotes: the case of the γ-Proteobacteria
E Lerat, V Daubin, NA Moran, D Penny
PLoS biology 1 (1), e19, 2003
Evolutionary origins of genomic repertoires in bacteria
E Lerat, V Daubin, H Ochman, NA Moran
PLoS biology 3 (5), e130, 2005
Examining bacterial species under the specter of gene transfer and exchange
H Ochman, E Lerat, V Daubin
Proceedings of the National Academy of Sciences 102 (suppl_1), 6595-6599, 2005
Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs
E Lerat
Heredity 104 (6), 520-533, 2010
The evolutionary history of quorum-sensing systems in bacteria
E Lerat, NA Moran
Molecular biology and evolution 21 (5), 903-913, 2004
The source of laterally transferred genes in bacterial genomes
V Daubin, E Lerat, G Perrière
Genome biology 4 (9), 1-12, 2003
Recognizing the pseudogenes in bacterial genomes
E Lerat, H Ochman
Nucleic acids research 33 (10), 3125-3132, 2005
Ψ-Φ: Exploring the outer limits of bacterial pseudogenes
E Lerat, H Ochman
Genome research 14 (11), 2273-2278, 2004
“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
M Bailly-Bechet, A Haudry, E Lerat
Mobile DNA 5 (1), 1-15, 2014
Sequence divergence within transposable element families in the Drosophila melanogaster genome
E Lerat, C Rizzon, C Biémont
Genome research 13 (8), 1889-1896, 2003
A call for benchmarking transposable element annotation methods
DR Hoen, G Hickey, G Bourque, J Casacuberta, R Cordaux, C Feschotte, ...
Mobile DNA 6 (1), 1-9, 2015
Retrotransposons and retroviruses: analysis of the envelope gene.
E Lerat, P Capy
Molecular biology and evolution 16 (9), 1198-1207, 1999
TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes
E Lerat, M Fablet, L Modolo, H Lopez-Maestre, C Vieira
Nucleic acids research 45 (4), e17-e17, 2017
Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes
E Lerat, N Burlet, C Biémont, C Vieira
Gene 473 (2), 100-109, 2011
UrQt: an efficient software for the Unsupervised Quality trimming of NGS data
L Modolo, E Lerat
BMC bioinformatics 16 (1), 1-8, 2015
Hypervariable and highly divergent intron–exon organizations in the chordate Oikopleura dioica
RB Edvardsen, E Lerat, AD Maeland, M Flåt, R Tewari, MF Jensen, ...
Journal of molecular evolution 59 (4), 448-457, 2004
Codon usage by transposable elements and their host genes in five species
E Lerat, P Capy, C Biémont
Journal of molecular evolution 54 (5), 625-637, 2002
Influence of the transposable element neighborhood on human gene expression in normal and tumor tissues
E Lerat, M Semon
Gene 396 (2), 303-311, 2007
Is the evolution of transposable elements modular?
E Lerat, F Brunet, C Bazin, P Capy
Transposable Elements and Genome Evolution, 15-25, 2000
Reversing gene erosion–reconstructing ancestral bacterial genomes from gene-content and order data
JV Earnest-DeYoung, E Lerat, BME Moret
International Workshop on Algorithms in Bioinformatics, 1-13, 2004
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