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Emmanuelle Lerat
Emmanuelle Lerat
Lab. Biometrie et Biologie Evolutive - Université Lyon 1
Verified email at univ-lyon1.fr
Title
Cited by
Cited by
Year
From gene trees to organismal phylogeny in prokaryotes: the case of the γ-Proteobacteria
E Lerat, V Daubin, NA Moran
PLoS biology 1 (1), e19, 2003
5242003
Evolutionary origins of genomic repertoires in bacteria
E Lerat, V Daubin, H Ochman, NA Moran
PLoS biology 3 (5), e130, 2005
3972005
Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs
E Lerat
Heredity 104 (6), 520-533, 2010
2712010
Examining bacterial species under the specter of gene transfer and exchange
H Ochman, E Lerat, V Daubin
Proceedings of the National Academy of Sciences 102 (suppl_1), 6595-6599, 2005
2672005
The evolutionary history of quorum-sensing systems in bacteria
E Lerat, NA Moran
Molecular biology and evolution 21 (5), 903-913, 2004
2392004
The source of laterally transferred genes in bacterial genomes
V Daubin, E Lerat, G Perrière
Genome biology 4, 1-12, 2003
2232003
Recognizing the pseudogenes in bacterial genomes
E Lerat, H Ochman
Nucleic acids research 33 (10), 3125-3132, 2005
1922005
The era of reference genomes in conservation genomics
G Formenti, K Theissinger, C Fernandes, I Bista, A Bombarely, C Bleidorn, ...
Trends in ecology & evolution 37 (3), 197-202, 2022
1422022
“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
M Bailly-Bechet, A Haudry, E Lerat
Mobile DNA 5, 1-15, 2014
1362014
Ψ-Φ: Exploring the outer limits of bacterial pseudogenes
E Lerat, H Ochman
Genome research 14 (11), 2273-2278, 2004
1182004
TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes
E Lerat, M Fablet, L Modolo, H Lopez-Maestre, C Vieira
Nucleic acids research 45 (4), e17-e17, 2017
1092017
Sequence divergence within transposable element families in the Drosophila melanogaster genome
E Lerat, C Rizzon, C Biémont
Genome research 13 (8), 1889-1896, 2003
1022003
A call for benchmarking transposable element annotation methods
DR Hoen, G Hickey, G Bourque, J Casacuberta, R Cordaux, C Feschotte, ...
Mobile DNA 6, 1-9, 2015
942015
Retrotransposons and retroviruses: analysis of the envelope gene.
E Lerat, P Capy
Molecular biology and evolution 16 (9), 1198-1207, 1999
911999
An overview of duplicated gene detection methods: Why the duplication mechanism has to be accounted for in their choice
T Lallemand, M Leduc, C Landès, C Rizzon, E Lerat
Genes 11 (9), 1046, 2020
802020
UrQt: an efficient software for the Unsupervised Quality trimming of NGS data
L Modolo, E Lerat
BMC bioinformatics 16, 1-8, 2015
682015
Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes
E Lerat, N Burlet, C Biémont, C Vieira
Gene 473 (2), 100-109, 2011
652011
How genomics can help biodiversity conservation
K Theissinger, C Fernandes, G Formenti, I Bista, PR Berg, C Bleidorn, ...
Trends in genetics 39 (7), 545-559, 2023
622023
Microsporidian genomes harbor a diverse array of transposable elements that demonstrate an ancestry of horizontal exchange with metazoans
N Parisot, A Pelin, C Gasc, V Polonais, A Belkorchia, J Panek, H El Alaoui, ...
Genome Biology and Evolution 6 (9), 2289-2300, 2014
462014
Hypervariable and Highly Divergent Intron–Exon Organizations in the Chordate Oikopleura dioica
RB Edvardsen, E Lerat, AD Maeland, M Flåt, R Tewari, MF Jensen, ...
Journal of molecular evolution 59, 448-457, 2004
452004
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