Tomasz Zok
Tomasz Zok
Poznan University of Technology & Poznan Supercomputing and Networking Center
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RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures
Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ...
Rna 21 (6), 1066-1084, 2015
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ...
Rna 23 (5), 655-672, 2017
The European Integrated Tokamak Modelling (ITM) effort: achievements and first physics results
GL Falchetto, D Coster, R Coelho, BD Scott, L Figini, D Kalupin, E Nardon, ...
Nuclear Fusion 54 (4), 043018, 2014
New functionality of RNAComposer: application to shape the axis of miR160 precursor structure
M Antczak, M Popenda, T Zok, J Sarzynska, T Ratajczak, K Tomczyk, ...
Acta Biochimica Polonica 63 (4), 737-744, 2016
RNApdbee—a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs
M Antczak, T Zok, M Popenda, P Lukasiak, RW Adamiak, J Blazewicz, ...
Nucleic acids research 42 (W1), W368-W372, 2014
INDIGO-DataCloud: A platform to facilitate seamless access to e-infrastructures
D Salomoni, I Campos, L Gaido, JM de Lucas, P Solagna, J Gomes, ...
Journal of Grid Computing 16 (3), 381-408, 2018
RNApdbee 2.0: multifunctional tool for RNA structure annotation
T Zok, M Antczak, M Zurkowski, M Popenda, J Blazewicz, RW Adamiak, ...
Nucleic acids research 46 (W1), W30-W35, 2018
MCQ4Structures to compute similarity of molecule structures
T Zok, M Popenda, M Szachniuk
Central European Journal of Operations Research 22 (3), 457-473, 2014
New in silico approach to assessing RNA secondary structures with non-canonical base pairs
A Rybarczyk, N Szostak, M Antczak, T Zok, M Popenda, R Adamiak, ...
BMC bioinformatics 16 (1), 1-12, 2015
Approaches to distributed execution of scientific workflows in kepler
M Płóciennik, T Żok, I Altintas, J Wang, D Crawl, D Abramson, F Imbeaux, ...
Fundamenta Informaticae 128 (3), 281-302, 2013
RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers
Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ...
RNA 26 (8), 982-995, 2020
RNA-puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools
M Magnus, M Antczak, T Zok, J Wiedemann, P Lukasiak, Y Cao, ...
Nucleic acids research 48 (2), 576-588, 2020
New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation
M Antczak, M Popenda, T Zok, M Zurkowski, RW Adamiak, M Szachniuk
Bioinformatics 34 (8), 1304-1312, 2018
Distributed and cloud-based multi-model analytics experiments on large volumes of climate change data in the earth system grid federation eco-system
S Fiore, M Płóciennik, C Doutriaux, C Palazzo, J Boutte, T Żok, D Elia, ...
2016 IEEE International Conference on Big Data (Big Data), 2911-2918, 2016
Topology-based classification of tetrads and quadruplex structures
M Popenda, J Miskiewicz, J Sarzynska, T Zok, M Szachniuk
Bioinformatics 36 (4), 1129-1134, 2020
RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs
M Antczak, M Zablocki, T Zok, A Rybarczyk, J Blazewicz, M Szachniuk
Bioinformatics 35 (1), 152-155, 2019
First physics applications of the Integrated Tokamak Modelling (ITM-TF) tools to the MHD stability analysis of experimental data and ITER scenarios
C Konz, W Zwingmann, F Osmanlic, B Guillerminet, F Imbeaux, P Huynh, ...
EPS, O2, 2011
Building the library of RNA 3D nucleotide conformations using the clustering approach
T Zok, M Antczak, M Riedel, D Nebel, T Villmann, P Lukasiak, J Blazewicz, ...
International Journal of Applied Mathematics and Computer Science 25 (3 …, 2015
RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures
M Antczak, T Zok, M Osowiecki, M Popenda, RW Adamiak, M Szachniuk
BMC bioinformatics 19 (1), 1-11, 2018
LCS-TA to identify similar fragments in RNA 3D structures
J Wiedemann, T Zok, M Milostan, M Szachniuk
BMC bioinformatics 18 (1), 1-13, 2017
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