Manon Ragonnet-Cronin
Manon Ragonnet-Cronin
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Assessing transmissibility of SARS-CoV-2 lineage B. 1.1. 7 in England
E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ...
Nature 593 (7858), 266-269, 2021
Reduction in mobility and COVID-19 transmission
P Nouvellet, S Bhatia, A Cori, KEC Ainslie, M Baguelin, S Bhatt, ...
Nature Communications 12 (1), 1-9, 2021
Automated analysis of phylogenetic clusters
M Ragonnet-Cronin, E Hodcroft, S Hué, E Fearnhill, V Delpech, ...
BMC bioinformatics 14, 1-10, 2013
Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient-and sequence-level meta-analysis
SY Rhee, JL Blanco, MR Jordan, J Taylor, P Lemey, V Varghese, ...
PLoS medicine 12 (4), e1001810, 2015
Comparison of molecular testing strategies for COVID-19 control: a mathematical modelling study
NC Grassly, M Pons-Salort, EPK Parker, PJ White, NM Ferguson, ...
The Lancet Infectious Diseases 20 (12), 1381-1389, 2020
HIV-1 modulates the tRNA pool to improve translation efficiency
A van Weringh, M Ragonnet-Cronin, E Pranckeviciene, M Pavon-Eternod, ...
Molecular biology and evolution 28 (6), 1827-1834, 2011
Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions
S Hué, AE Brown, M Ragonnet-Cronin, SJ Lycett, DT Dunn, E Fearnhill, ...
Aids 28 (13), 1967-1975, 2014
Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City region
MT Maurano, S Ramaswami, P Zappile, D Dimartino, L Boytard, ...
Genome research 30 (12), 1781-1788, 2020
Identifying transmission clusters with cluster picker and HIV-TRACE
R Rose, SL Lamers, JJ Dollar, MK Grabowski, EB Hodcroft, ...
AIDS research and human retroviruses 33 (3), 211-218, 2017
HIV transmission networks among transgender women in Los Angeles County, CA, USA: a phylogenetic analysis of surveillance data
M Ragonnet-Cronin, YW Hu, SR Morris, Z Sheng, K Poortinga, ...
The Lancet HIV 6 (3), e164-e172, 2019
Genetic diversity as a marker for timing infection in HIV-infected patients: evaluation of a 6-month window and comparison with BED
M Ragonnet-Cronin, S Aris-Brosou, I Joanisse, H Merks, D Vallée, ...
The Journal of infectious diseases 206 (5), 756-764, 2012
Recent and rapid transmission of HIV among people who inject drugs in Scotland revealed through phylogenetic analysis
M Ragonnet-Cronin, C Jackson, A Bradley-Stewart, C Aitken, A McAuley, ...
The Journal of infectious diseases 217 (12), 1875-1882, 2018
Report 33: Modelling the allocation and impact of a COVID-19 vaccine
A Hogan, P Winskill, O Watson, P Walker, C Whittaker, M Baguelin, ...
Imperial College London, 2020
Transmission of non-B HIV subtypes in the United Kingdom is increasingly driven by large non-heterosexual transmission clusters
M Ragonnet-Cronin, SJ Lycett, EB Hodcroft, S Hué, E Fearnhill, AE Brown, ...
The Journal of infectious diseases 213 (9), 1410-1418, 2016
FAVITES: simultaneous simulation of transmission networks, phylogenetic trees, and sequences
N Moshiri, M Ragonnet-Cronin, J Wertheim, S Mirarab
Bioinformatics, 2018
Longitudinal phylogenetic surveillance identifies distinct patterns of cluster dynamics
M Ragonnet-Cronin, M Ofner-Agostini, H Merks, R Pilon, M Rekart, ...
JAIDS Journal of Acquired Immune Deficiency Syndromes 55 (1), 102-108, 2010
Report 16: Role of testing in COVID-19 control
N Grassly, M Pons Salort, E Parker, P White, K Ainslie, M Baguelin, ...
Imperial College London, 2020
Non-disclosed men who have sex with men in UK HIV transmission networks: phylogenetic analysis of surveillance data
M Ragonnet-Cronin, S Hué, EB Hodcroft, A Tostevin, D Dunn, T Fawcett, ...
The lancet HIV 5 (6), e309-e316, 2018
Analysis of the history and spread of HIV-1 in Uganda using phylodynamics
G Yebra, M Ragonnet-Cronin, D Ssemwanga, CM Parry, CH Logue, ...
Journal of General Virology 96 (Pt_7), 1890-1898, 2015
Genetic evidence for the association between COVID-19 epidemic severity and timing of non-pharmaceutical interventions
M Ragonnet-Cronin, O Boyd, L Geidelberg, D Jorgensen, FF Nascimento, ...
Nature Communications 12 (1), 1-7, 2021
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