Jason McDermott
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The genomes of Oryza sativa: a history of duplications
J Yu, J Wang, W Lin, S Li, H Li, J Zhou, P Ni, W Dong, S Hu, C Zeng, ...
PLoS Biol 3 (2), e38, 2005
Integrated proteogenomic characterization of human high-grade serous ovarian cancer
H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ...
Cell 166 (3), 755-765, 2016
Temporal proteome and lipidome profiles reveal hepatitis C virus-associated reprogramming of hepatocellular metabolism and bioenergetics
DL Diamond, AJ Syder, JM Jacobs, CM Sorensen, KA Walters, SC Proll, ...
PLoS Pathog 6 (1), e1000719, 2010
Accurate prediction of secreted substrates and identification of a conserved putative secretion signal for type III secretion systems
R Samudrala, F Heffron, JE McDermott
PLoS pathog 5 (4), e1000375, 2009
Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics
BJM Webb-Robertson, HK Wiberg, MM Matzke, JN Brown, J Wang, ...
Journal of proteome research 14 (5), 1993-2001, 2015
Co-expression of CD39 and CD103 identifies tumor-reactive CD8 T cells in human solid tumors
T Duhen, R Duhen, R Montler, J Moses, T Moudgil, NF de Miranda, ...
Nature communications 9 (1), 1-13, 2018
Challenges in biomarker discovery: combining expert insights with statistical analysis of complex omics data
JE McDermott, J Wang, H Mitchell, BJ Webb-Robertson, R Hafen, ...
Expert opinion on medical diagnostics 7 (1), 37-51, 2013
Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium
H Yoon, JE McDermott, S Porwollik, M McClelland, F Heffron
PLoS Pathog 5 (2), e1000306, 2009
Conditional infectivity of a human immunodeficiency virus matrix domain deletion mutant.
CT Wang, Y Zhang, J McDermott, E Barklis
Journal of Virology 67 (12), 7067-7076, 1993
Discovery of novel secreted virulence factors from Salmonella enterica serovar Typhimurium by proteomic analysis of culture supernatants
GS Niemann, RN Brown, JK Gustin, A Stufkens, AS Shaikh-Kidwai, J Li, ...
Infection and immunity 79 (1), 33-43, 2011
Computational prediction of type III and IV secreted effectors in gram-negative bacteria
JE McDermott, A Corrigan, E Peterson, C Oehmen, G Niemann, ...
Infection and immunity 79 (1), 23-32, 2011
A systems biology approach to infectious disease research: innovating the pathogen-host research paradigm
A Aderem, JN Adkins, C Ansong, J Galagan, S Kaiser, MJ Korth, GL Law, ...
MBio 2 (1), 2011
Structural analysis of membrane‐bound retrovirus capsid proteins
E Barklis, J McDermott, S Wilkens, E Schabtach, MF Schmid, S Fuller, ...
The EMBO journal 16 (6), 1199-1213, 1997
Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities
S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ...
Cell 177 (4), 1035-1049. e19, 2019
Origin and evolution of new exons in rodents
W Wang, H Zheng, S Yang, H Yu, J Li, H Jiang, J Su, L Yang, J Zhang, ...
Genome research 15 (9), 1258-1264, 2005
Impact of dietary resistant starch on the human gut microbiome, metaproteome, and metabolome
TV Maier, M Lucio, LH Lee, NC VerBerkmoes, CJ Brislawn, J Bernhardt, ...
MBio 8 (5), 2017
Retrovirus capsid protein assembly arrangements
K Mayo, D Huseby, J McDermott, B Arvidson, L Finlay, E Barklis
Journal of molecular biology 325 (1), 225-237, 2003
Structural analysis of human immunodeficiency virus type 1 Gag protein interactions, using cysteine-specific reagents.
J McDermott, L Farrell, R Ross, E Barklis
Journal of virology 70 (8), 5106-5114, 1996
Functional annotation from predicted protein interaction networks
J McDermott, R Bumgarner, R Samudrala
Bioinformatics 21 (15), 3217-3226, 2005
A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label‐free LC‐MS proteomics experiments
MM Matzke, JN Brown, MA Gritsenko, TO Metz, JG Pounds, KD Rodland, ...
Proteomics 13 (3-4), 493-503, 2013
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