| Akt-dependent metabolic reprogramming regulates tumor cell histone acetylation JV Lee, A Carrer, S Shah, NW Snyder, S Wei, S Venneti, AJ Worth, ... Cell metabolism 20 (2), 306-319, 2014 | 537 | 2014 |
| Critical role of histone turnover in neuronal transcription and plasticity I Maze, W Wenderski, KM Noh, RC Bagot, N Tzavaras, I Purushothaman, ... Neuron 87 (1), 77-94, 2015 | 305 | 2015 |
| pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry L Wang, DQ Li, Y Fu, HP Wang, JF Zhang, ZF Yuan, RX Sun, R Zeng, ... Rapid Communications in Mass Spectrometry: An International Journal Devoted …, 2007 | 230 | 2007 |
| pNovo: De novo Peptide Sequencing and Identification Using HCD Spectra H Chi, RX Sun, B Yang, CQ Song, LH Wang, C Liu, Y Fu, ZF Yuan, ... Journal of proteome research 9 (5), 2713-2724, 2010 | 185 | 2010 |
| Characterization of histone acylations links chromatin modifications with metabolism J Simithy, S Sidoli, ZF Yuan, M Coradin, NV Bhanu, DM Marchione, ... Nature communications 8 (1), 1141, 2017 | 178 | 2017 |
| EpiProfile 2.0: a computational platform for processing epi-proteomics mass spectrometry data ZF Yuan, S Sidoli, DM Marchione, J Simithy, KA Janssen, MR Szurgot, ... Journal of proteome research 17 (7), 2533-2541, 2018 | 136 | 2018 |
| A Strategy for Precise and Large Scale Identification of Core Fucosylated Glycoproteins* S W Jia, Z Lu, Y Fu, HP Wang, LH Wang, H Chi, ZF Yuan, ZB Zheng, ... Molecular & Cellular Proteomics 8 (5), 913-923, 2009 | 107 | 2009 |
| EpiProfile quantifies histone peptides with modifications by extracting retention time and intensity in high-resolution mass spectra*[S] ZF Yuan, S Lin, RC Molden, XJ Cao, NV Bhanu, X Wang, S Sidoli, S Liu, ... Molecular & Cellular Proteomics 14 (6), 1696-1707, 2015 | 99 | 2015 |
| Naked mole rat cells have a stable epigenome that resists iPSC reprogramming L Tan, Z Ke, G Tombline, N Macoretta, K Hayes, X Tian, R Lv, J Ablaeva, ... Stem cell reports 9 (5), 1721-1734, 2017 | 91 | 2017 |
| Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate D Ye, Y Fu, RX Sun, HP Wang, ZF Yuan, H Chi, SM He Bioinformatics 26 (12), i399-i406, 2010 | 91 | 2010 |
| A novel quantitative mass spectrometry platform for determining protein O-GlcNAcylation dynamics X Wang, ZF Yuan, J Fan, KR Karch, LE Ball, JM Denu, BA Garcia Molecular & Cellular Proteomics 15 (7), 2462-2475, 2016 | 79 | 2016 |
| pQuant improves quantitation by keeping out interfering signals and evaluating the accuracy of calculated ratios C Liu, CQ Song, ZF Yuan, Y Fu, H Chi, LH Wang, SB Fan, K Zhang, ... Analytical chemistry 86 (11), 5286-5294, 2014 | 77 | 2014 |
| Stable-isotope-labeled histone peptide library for histone post-translational modification and variant quantification by mass spectrometry S Lin, S Wein, M Gonzales-Cope, GL Otte, ZF Yuan, L Afjehi-Sadat, ... Molecular & Cellular Proteomics 13 (9), 2450-2466, 2014 | 73 | 2014 |
| pFind–Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data H Chi, K He, B Yang, Z Chen, RX Sun, SB Fan, K Zhang, C Liu, ZF Yuan, ... Journal of proteomics 125, 89-97, 2015 | 72 | 2015 |
| pParse: A method for accurate determination of monoisotopic peaks in high‐resolution mass spectra ZF Yuan, C Liu, HP Wang, RX Sun, Y Fu, JF Zhang, LH Wang, H Chi, Y Li, ... Proteomics 12 (2), 226-235, 2012 | 68 | 2012 |
| Mass spectrometric analysis of histone proteoforms ZF Yuan, AM Arnaudo, BA Garcia Annual review of analytical chemistry 7, 113-128, 2014 | 63 | 2014 |
| Interrogating histone acetylation and BRD4 as mitotic bookmarks of transcription V Behera, AJ Stonestrom, N Hamagami, CC Hsiung, CA Keller, ... Cell reports 27 (2), 400-415. e5, 2019 | 57 | 2019 |
| Drawbacks in the use of unconventional hydrophobic anhydrides for histone derivatization in bottom‐up proteomics PTM analysis S Sidoli, ZF Yuan, S Lin, K Karch, X Wang, N Bhanu, AM Arnaudo, ... Proteomics 15 (9), 1459-1469, 2015 | 57 | 2015 |
| Histone H3.3 beyond cancer: Germline mutations in Histone 3 Family 3A and 3B cause a previously unidentified neurodegenerative disorder in 46 patients L Bryant, D Li, SG Cox, D Marchione, EF Joiner, K Wilson, K Janssen, ... Science advances 6 (49), eabc9207, 2020 | 51 | 2020 |
| Proteome-wide acetylation dynamics in human cells Y Kori, S Sidoli, ZF Yuan, PJ Lund, X Zhao, BA Garcia Scientific reports 7 (1), 10296, 2017 | 51 | 2017 |
