William A Baumgartner Jr
William A Baumgartner Jr
Research Associate, University of Colorado Denver
Adresse e-mail validée de ucdenver.edu
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Overview of BioCreative II gene mention recognition
L Smith, LK Tanabe, RJ nee Ando, CJ Kuo, IF Chung, CN Hsu, YS Lin, ...
Genome biology 9 (S2), S2, 2008
3472008
Manual curation is not sufficient for annotation of genomic databases
WA Baumgartner Jr, KB Cohen, LM Fox, G Acquaah-Mensah, L Hunter
Bioinformatics 23 (13), i41-i48, 2007
2692007
Concept annotation in the CRAFT corpus
M Bada, M Eckert, D Evans, K Garcia, K Shipley, D Sitnikov, ...
BMC bioinformatics 13 (1), 161, 2012
1852012
OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type …
L Hunter, Z Lu, J Firby, WA Baumgartner, HL Johnson, PV Ogren, ...
BMC bioinformatics 9 (1), 78, 2008
1622008
MutationFinder: a high-performance system for extracting point mutation mentions from text
JG Caporaso, WA Baumgartner Jr, DA Randolph, KB Cohen, L Hunter
Bioinformatics 23 (14), 1862-1865, 2007
1612007
BioLemmatizer: a lemmatization tool for morphological processing of biomedical text
H Liu, T Christiansen, WAB Jr, K Verspoor
Journal of Biomedical Semantics 3 (1), 3, 2012
1322012
U-Compare: share and compare text mining tools with UIMA
Y Kano, WA Baumgartner Jr, L McCrohon, S Ananiadou, KB Cohen, ...
Bioinformatics 25 (15), 1997-1998, 2009
1182009
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools
K Verspoor, KB Cohen, A Lanfranchi, C Warner, HL Johnson, C Roeder, ...
BMC bioinformatics 13 (1), 207, 2012
1052012
Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters
C Funk, W Baumgartner, B Garcia, C Roeder, M Bada, KB Cohen, ...
BMC bioinformatics 15 (1), 59, 2014
962014
Introducing meta-services for biomedical information extraction
F Leitner, M Krallinger, C Rodriguez-Penagos, J Hakenberg, C Plake, ...
Genome biology 9 (S2), S6, 2008
872008
Pulmonary capillaries are recruited during pulsatile flow
RG Presson Jr, WA Baumgartner Jr, AJ Peterson, RW Glenny, ...
Journal of Applied Physiology, 2002
862002
High-precision biological event extraction with a concept recognizer
KB Cohen, K Verspoor, HL Johnson, C Roeder, P Ogren, ...
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, 50-58, 2009
752009
Biomedical discovery acceleration, with applications to craniofacial development
SM Leach, H Tipney, W Feng, WA Baumgartner, P Kasliwal, RP Schuyler, ...
PLoS computational biology 5 (3), e1000215, 2009
752009
KaBOB: ontology-based semantic integration of biomedical databases
KM Livingston, M Bada, WA Baumgartner, LE Hunter
BMC bioinformatics 16 (1), 1-21, 2015
642015
An open-source framework for large-scale, flexible evaluation of biomedical text mining systems
WA Baumgartner, KB Cohen, L Hunter
Journal of Biomedical Discovery and Collaboration 3 (1), 1, 2008
592008
Concept recognition for extracting protein interaction relations from biomedical text
WA Baumgartner, Z Lu, HL Johnson, JG Caporaso, J Paquette, ...
Genome biology 9 (S2), S9, 2008
572008
Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies
HL Johnson, KB Cohen, WA Baumgartner Jr, Z Lu, M Bada, T Kester, ...
Biocomputing 2006, 28-39, 2006
492006
Improving protein function prediction methods with integrated literature data
A Gabow, S Leach, W Baumgartner, L Hunter, D Goldberg
BMC bioinformatics 9 (1), 198, 2008
332008
Annotation of all coreference in biomedical text: Guideline selection and adaptation
KB Cohen, A Lanfranchi, W Corvey, WA Baumgartner Jr, C Roeder, ...
Proceedings of BioTxtM 2010: 2nd workshop on building and evaluating …, 2010
282010
Selected contribution: measuring the response time of pulmonary capillary recruitment to sudden flow changes
EM Jaryszak, WA Baumgartner Jr, AJ Peterson, RG Presson Jr, ...
Journal of Applied Physiology 89 (3), 1233-1238, 2000
272000
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