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David James Sherman
David James Sherman
Verified email at inria.fr
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Genome evolution in yeasts
B Dujon, D Sherman, G Fischer, P Durrens, S Casaregola, I Lafontaine, ...
Nature 430 (6995), 35-44, 2004
19532004
IntAct: an open source molecular interaction database
H Hermjakob, L Montecchi‐Palazzi, C Lewington, S Mudali, S Kerrien, ...
Nucleic acids research 32 (suppl_1), D452-D455, 2004
11872004
The HUPO PSI's molecular interaction format—a community standard for the representation of protein interaction data
H Hermjakob, L Montecchi-Palazzi, G Bader, J Wojcik, L Salwinski, ...
Nature biotechnology 22 (2), 177-183, 2004
7552004
Broadening the horizon–level 2.5 of the HUPO-PSI format for molecular interactions
S Kerrien, S Orchard, L Montecchi-Palazzi, B Aranda, AF Quinn, N Vinod, ...
BMC biology 5, 1-11, 2007
3072007
ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome
MJ Taussig, O Stoevesandt, CAK Borrebaeck, AR Bradbury, D Cahill, ...
Nature methods 4 (1), 13-17, 2007
2572007
Comparative genomics of protoploid Saccharomycetaceae
JL Souciet, B Dujon, C Gaillardin, M Johnston, PV Baret, P Cliften, ...
Genome research 19 (10), 1696-1709, 2009
2432009
A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum
P Almeida, C Gonçalves, S Teixeira, D Libkind, M Bontrager, ...
Nature communications 5 (1), 4044, 2014
2162014
ProViz: protein interaction visualization and exploration
F Iragne, M Nikolski, B Mathieu, D Auber, D Sherman
Bioinformatics 21 (2), 272-274, 2005
1572005
Genolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes
DJ Sherman, T Martin, M Nikolski, C Cayla, JL Souciet, P Durrens
Nucleic acids research 37 (suppl_1), D550-D554, 2009
1412009
Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains
AB Canelas, N Harrison, A Fazio, J Zhang, JP Pitkänen, J Van Den Brink, ...
Nature communications 1 (1), 145, 2010
1292010
A genome-scale metabolic model of the lipid-accumulating yeast Yarrowia lipolytica
N Loira, T Dulermo, JM Nicaud, DJ Sherman
BMC systems biology 6, 1-9, 2012
1252012
QTL Dissection of Lag Phase in Wine Fermentation Reveals a New Translocation Responsible for Saccharomyces cerevisiae Adaptation to Sulfite
A Zimmer, C Durand, N Loira, P Durrens, DJ Sherman, P Marullo
Plos one 9 (1), e86298, 2014
1172014
Common interchange standards for proteomics data: Public availability of tools and schema. Report on the Proteomic Standards Initiative Workshop, 2nd Annual HUPO …
S Orchard, H Hermjakob, RK Julian Jr, K Runte, D Sherman, J Wojcik, ...
Proteomics 4 (2), 490-491, 2004
1172004
Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization
VL Louis, L Despons, A Friedrich, T Martin, P Durrens, S Casaregola, ...
G3: Genes| Genomes| Genetics 2 (2), 299-311, 2012
1142012
Genolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts
D Sherman, Génolevures Consortium, P Durrens, ...
Nucleic acids research 32 (suppl_1), D315-D318, 2004
1072004
Diversity and variability of NOD-like receptors in fungi
W Dyrka, M Lamacchia, P Durrens, B Kobe, A Daskalov, M Paoletti, ...
Genome biology and evolution 6 (12), 3137-3158, 2014
912014
The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest
G Kunze, C Gaillardin, M Czernicka, P Durrens, T Martin, E Böer, ...
Biotechnology for biofuels 7, 1-15, 2014
692014
Genolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts
D Sherman, P Durrens, F Iragne, E Beyne, M Nikolski, JL Souciet
Nucleic Acids Research 34 (suppl_1), D432-D435, 2006
612006
Phylogenomic Analysis of Oenococcus oeni Reveals Specific Domestication of Strains to Cider and Wines
H Campbell-Sills, M El Khoury, M Favier, A Romano, F Biasioli, G Spano, ...
Genome Biology and Evolution 7 (6), 1506-1518, 2015
582015
Minimum information about a protein affinity reagent (MIAPAR)
J Bourbeillon, S Orchard, I Benhar, C Borrebaeck, A De Daruvar, S Dübel, ...
Nature biotechnology 28 (7), 650-653, 2010
492010
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