| MrBayes 3: Bayesian phylogenetic inference under mixed models F Ronquist, JP Huelsenbeck Bioinformatics 19 (12), 1572-1574, 2003 | 27227 | 2003 |
| MRBAYES: Bayesian inference of phylogenetic trees JP Huelsenbeck, F Ronquist Bioinformatics 17 (8), 754-755, 2001 | 23770* | 2001 |
| MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space F Ronquist, M Teslenko, P Van Der Mark, DL Ayres, A Darling, S Höhna, ... Systematic biology 61 (3), 539-542, 2012 | 13079 | 2012 |
| Bayesian phylogenetic analysis of combined data JAA Nylander, F Ronquist, JP Huelsenbeck, J Nieves-Aldrey Systematic biology 53 (1), 47-67, 2004 | 1762 | 2004 |
| Signal, noise, and reliability in molecular phylogenetic analyses DM Hillis, JP Huelsenbeck Journal of heredity 83 (3), 189-195, 1992 | 1438 | 1992 |
| Phylogeny estimation and hypothesis testing using maximum likelihood JP Huelsenbeck, KA Crandall Annual Review of Ecology and Systematics 28 (1), 437-466, 1997 | 1165 | 1997 |
| Parallel metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference G Altekar, S Dwarkadas, JP Huelsenbeck, F Ronquist Bioinformatics 20 (3), 407-415, 2004 | 1046 | 2004 |
| Partitioning and combining data in phylogenetic analysis JJ Bull, JP Huelsenbeck, CW Cunningham, DL Swofford, PJ Waddell Systematic Biology 42 (3), 384-397, 1993 | 1016 | 1993 |
| Potential applications and pitfalls of Bayesian inference of phylogeny JP Huelsenbeck, B Larget, RE Miller, F Ronquist Systematic biology 51 (5), 673-688, 2002 | 934 | 2002 |
| Combining data in phylogenetic analysis JP Huelsenbeck, JJ Bull, CW Cunningham Trends in Ecology & Evolution 11 (4), 152-158, 1996 | 918 | 1996 |
| Phylogenetic methods come of age: testing hypotheses in an evolutionary context JP Huelsenbeck, B Rannala Science 276 (5310), 227-232, 1997 | 877 | 1997 |
| Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models JP Huelsenbeck, B Rannala Systematic biology 53 (6), 904-913, 2004 | 809 | 2004 |
| Success of phylogenetic methods in the four-taxon case JP Huelsenbeck, DM Hillis Systematic Biology 42 (3), 247-264, 1993 | 789 | 1993 |
| Performance of phylogenetic methods in simulation JP Huelsenbeck Systematic biology 44 (1), 17-48, 1995 | 682 | 1995 |
| Stochastic mapping of morphological characters JP Huelsenbeck, R Nielsen, JP Bollback Systematic biology 52 (2), 131-158, 2003 | 618 | 2003 |
| Application and accuracy of molecular phylogenies DM Hillis, JP Huelsenbeck, CW Cunningham Science 264 (5159), 671-677, 1994 | 603 | 1994 |
| Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo JP Huelsenbeck, B Larget, ME Alfaro Molecular biology and evolution 21 (6), 1123-1133, 2004 | 444 | 2004 |
| Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods DL Swofford, PJ Waddell, JP Huelsenbeck, PG Foster, PO Lewis, ... Systematic biology 50 (4), 525-539, 2001 | 420 | 2001 |
| BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics DL Ayres, A Darling, DJ Zwickl, P Beerli, MT Holder, PO Lewis, ... Systematic biology 61 (1), 170-173, 2012 | 402 | 2012 |
| Alignment uncertainty and genomic analysis KM Wong, MA Suchard, JP Huelsenbeck Science 319 (5862), 473-476, 2008 | 373 | 2008 |
