Unified rational protein engineering with sequence-based deep representation learning EC Alley, G Khimulya, S Biswas, M AlQuraishi, GM Church
Nature methods 16 (12), 1315-1322, 2019
897 2019 Phytochromes function as thermosensors in Arabidopsis JH Jung, M Domijan, C Klose, S Biswas, D Ezer, M Gao, AK Khattak, ...
Science 354 (6314), 886-889, 2016
795 2016 Low-N protein engineering with data-efficient deep learning S Biswas, G Khimulya, EC Alley, KM Esvelt, GM Church
Nature methods 18 (4), 389-396, 2021
328 2021 Single-sequence protein structure prediction using a language model and deep learning R Chowdhury, N Bouatta, S Biswas, C Floristean, A Kharkar, K Roy, ...
Nature Biotechnology 40 (11), 1617-1623, 2022
263 2022 The evening complex coordinates environmental and endogenous signals in Arabidopsis D Ezer, JH Jung, H Lan, S Biswas, L Gregoire, MS Box, V Charoensawan, ...
Nature plants 3 (7), 1-12, 2017
237 2017 Pseudomonas syringae type III effector HopBB1 promotes host transcriptional repressor degradation to regulate phytohormone responses and virulence L Yang, PJPL Teixeira, S Biswas, OM Finkel, Y He, I Salas-Gonzalez, ...
Cell host & microbe 21 (2), 156-168, 2017
124 2017 The G-Box transcriptional regulatory code in Arabidopsis D Ezer, SJK Shepherd, A Brestovitsky, P Dickinson, S Cortijo, ...
Plant physiology 175 (2), 628-640, 2017
108 2017 Learning microbial interaction networks from metagenomic count data S Biswas, M Mcdonald, DS Lundberg, JL Dangl, V Jojic
Journal of Computational Biology 23 (6), 526-535, 2016
76 2016 The Molecular Basis of Host Specialization in Bean Pathovars of Pseudomonas syringae DA Baltrus, MT Nishimura, KM Dougherty, S Biswas, MS Mukhtar, ...
Molecular plant-microbe interactions 25 (7), 877-888, 2012
73 2012 Toward machine-guided design of proteins S Biswas, G Kuznetsov, PJ Ogden, NJ Conway, RP Adams, GM Church
BioRxiv, 337154, 2018
37 2018 Variable Suites of Non-effector Genes Are Co-regulated in the Type III Secretion Virulence Regulon across the Pseudomonas syringae Phylogeny TS Mucyn, S Yourstone, AL Lind, S Biswas, MT Nishimura, DA Baltrus, ...
PLoS pathogens 10 (1), e1003807, 2014
30 2014 Tradict enables accurate prediction of eukaryotic transcriptional states from 100 marker genes S Biswas, K Kerner, PJPL Teixeira, JL Dangl, V Jojic, PA Wigge
Nature communications 8 (1), 15309, 2017
18 * 2017 Biological averaging in RNA-seq S Biswas, YN Agrawal, TS Mucyn, JL Dangl, CD Jones
arXiv preprint arXiv:1309.0670, 2013
16 2013 What to trust in a Magnetotelluric Model KK Roy, S Dey, S Srivastava, S Biswas
J. Indian Geophys. Union 8 (2), 157-171, 2004
7 2004 Principles of machine learning-guided protein engineering S Biswas
Harvard University, 2020
3 2020 The latent logarithm S Biswas
arXiv preprint arXiv:1605.06064, 2016
2 2016 Single-sequence protein structure prediction using a language model and deep learning (Oct, 10.1038/s41587-022-01432-w, 2022) R Chowdhury, N Bouatta, S Biswas, C Floristean, A Kharkar, K Roy, ...
NATURE BIOTECHNOLOGY 40 (11), 1692-1692, 2022
1 2022 CumbieJasonBotanyPlantPathologyVariableSuitesNon-Effector. pdf TS Mucyn, S Yourstone, AL Lind, S Biswas, MT Nishimura, DA Baltrus, ...
2017 Phytochromes function as thermosensors in JH Jung, M Domijan, C Klose, S Biswas, D Ezer, M Gao, AK Khattak, ...
American Association for the Advancement of Science, 2016
2016 Variable Suites of Non-effector Genes Are Co-regulated in the Type III Secretion TS Mucyn, S Yourstone, AL Lind, S Biswas, MT Nishimura
2014