Kevin Molloy
Kevin Molloy
Assistant Professor, Department of Computer Science, James Madison University
Verified email at - Homepage
Cited by
Cited by
In search of the protein native state with a probabilistic sampling approach
B Olson, K Molloy, A Shehu
Journal of Bioinformatics and Computational Biology 9 (03), 383-398, 2011
Basin hopping as a general and versatile optimization framework for the characterization of biological macromolecules
B Olson, I Hashmi, K Molloy, A Shehu
Advances in Artificial Intelligence 2012, 2012
Probabilistic search and energy guidance for biased decoy sampling in ab initio protein structure prediction
K Molloy, S Saleh, A Shehu
IEEE/ACM transactions on computational biology and bioinformatics 10 (5 …, 2013
Elucidating the ensemble of functionally-relevant transitions in protein systems with a robotics-inspired method
K Molloy, A Shehu
BMC structural biology 13 (S1), S8, 2013
A survey of computational methods for protein function prediction
A Shehu, D Barbará, K Molloy
Big Data Analytics in Genomics, 225-298, 2016
Guiding probabilistic search of the protein conformational space with structural profiles
B Olson, K Molloy, SF Hendi, A Shehu
Journal of bioinformatics and computational biology 10 (03), 1242005, 2012
Characterizing energy landscapes of peptides using a combination of stochastic algorithms
D Devaurs, K Molloy, M Vaisset, A Shehu, T Siméon, J Cortés
IEEE transactions on nanobioscience 14 (5), 545-552, 2015
Enhancing sampling of the conformational space near the protein native state
B Olson, K Molloy, A Shehu
International Conference on Bio-Inspired Models of Network, Information, and …, 2010
A stochastic roadmap method to model protein structural transitions
K Molloy, R Clausen, A Shehu
Robotica 34 (8), 1705-1733, 2016
Interleaving global and local search for protein motion computation
K Molloy, A Shehu
International Symposium on Bioinformatics Research and Applications, 175-186, 2015
A general, adaptive, roadmap-based algorithm for protein motion computation
K Molloy, A Shehu
IEEE transactions on nanobioscience 15 (2), 158-165, 2016
Exploring representations of protein structure for automated remote homology detection and mapping of protein structure space
K Molloy, MJ Van, D Barbara, A Shehu
BMC bioinformatics 15 (8), S4, 2014
The minimal dependency relation for causal event ordering in distributed computing
SEP Hernández
Biased decoy sampling to aid the selection of near-native protein conformations
K Molloy, A Shehu
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
Combining system design and path planning
L Denarie, K Molloy, M Vaisset, T Siméon, J Cortés
Algorithmic Foundations of Robotics XII, 112-127, 2020
A robotics-inspired method to sample conformational paths connecting known functionally-relevant structures in protein systems
K Molloy, A Shehu
2012 IEEE International Conference on Bioinformatics and Biomedicine …, 2012
Simultaneous system design and path planning: A sampling-based algorithm
K Molloy, L Denarie, M Vaisset, T Siméon, J Cortés
The International Journal of Robotics Research 38 (2-3), 375-387, 2019
Hybrid parallelization of a multi-tree path search algorithm: Application to highly-flexible biomolecules
A Estaña, K Molloy, M Vaisset, N Sibille, T Simeon, P Bernadó, J Cortés
Parallel Computing 77, 84-100, 2018
Variable-length fragment assembly within a probabilistic protein structure prediction framework
K Molloy
George Mason University, 2011
Probabilistic Algorithms for Modeling Protein Structure and Dynamics
KP Molloy
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