Kevin Molloy
Kevin Molloy
Assistant Professor, Department of Computer Science, James Madison University
Verified email at jmu.edu - Homepage
Title
Cited by
Cited by
Year
In search of the protein native state with a probabilistic sampling approach
B Olson, K Molloy, A Shehu
Journal of Bioinformatics and Computational Biology 9 (03), 383-398, 2011
352011
Basin hopping as a general and versatile optimization framework for the characterization of biological macromolecules
B Olson, I Hashmi, K Molloy, A Shehu
Advances in Artificial Intelligence 2012, 2012
342012
Probabilistic search and energy guidance for biased decoy sampling in ab initio protein structure prediction
K Molloy, S Saleh, A Shehu
IEEE/ACM transactions on computational biology and bioinformatics 10 (5 …, 2013
332013
Elucidating the ensemble of functionally-relevant transitions in protein systems with a robotics-inspired method
K Molloy, A Shehu
BMC structural biology 13 (S1), S8, 2013
302013
A survey of computational methods for protein function prediction
A Shehu, D Barbará, K Molloy
Big Data Analytics in Genomics, 225-298, 2016
292016
Guiding probabilistic search of the protein conformational space with structural profiles
B Olson, K Molloy, SF Hendi, A Shehu
Journal of bioinformatics and computational biology 10 (03), 1242005, 2012
252012
Characterizing energy landscapes of peptides using a combination of stochastic algorithms
D Devaurs, K Molloy, M Vaisset, A Shehu, T Siméon, J Cortés
IEEE transactions on nanobioscience 14 (5), 545-552, 2015
242015
Enhancing sampling of the conformational space near the protein native state
B Olson, K Molloy, A Shehu
International Conference on Bio-Inspired Models of Network, Information, and …, 2010
142010
A stochastic roadmap method to model protein structural transitions
K Molloy, R Clausen, A Shehu
Robotica 34 (8), 1705-1733, 2016
102016
Interleaving global and local search for protein motion computation
K Molloy, A Shehu
International Symposium on Bioinformatics Research and Applications, 175-186, 2015
102015
A general, adaptive, roadmap-based algorithm for protein motion computation
K Molloy, A Shehu
IEEE transactions on nanobioscience 15 (2), 158-165, 2016
92016
Exploring representations of protein structure for automated remote homology detection and mapping of protein structure space
K Molloy, MJ Van, D Barbara, A Shehu
BMC bioinformatics 15 (8), S4, 2014
92014
The minimal dependency relation for causal event ordering in distributed computing
SEP Hernández
82015
Biased decoy sampling to aid the selection of near-native protein conformations
K Molloy, A Shehu
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
72012
Combining system design and path planning
L Denarie, K Molloy, M Vaisset, T Siméon, J Cortés
Algorithmic Foundations of Robotics XII, 112-127, 2020
62020
A robotics-inspired method to sample conformational paths connecting known functionally-relevant structures in protein systems
K Molloy, A Shehu
2012 IEEE International Conference on Bioinformatics and Biomedicine …, 2012
62012
Simultaneous system design and path planning: A sampling-based algorithm
K Molloy, L Denarie, M Vaisset, T Siméon, J Cortés
The International Journal of Robotics Research 38 (2-3), 375-387, 2019
32019
Hybrid parallelization of a multi-tree path search algorithm: Application to highly-flexible biomolecules
A Estaña, K Molloy, M Vaisset, N Sibille, T Simeon, P Bernadó, J Cortés
Parallel Computing 77, 84-100, 2018
32018
Variable-length fragment assembly within a probabilistic protein structure prediction framework
K Molloy
George Mason University, 2011
32011
Probabilistic Algorithms for Modeling Protein Structure and Dynamics
KP Molloy
22015
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Articles 1–20