Vincent Berry
Vincent Berry
LIRMM, Université Montpellier - CNRS
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Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti
E Cornillot, K Hadj-Kaddour, A Dassouli, B Noel, V Ranwez, B Vacherie, ...
Nucleic acids research 40 (18), 9102-9114, 2012
An efficient algorithm for gene/species trees parsimonious reconciliation with losses, duplications and transfers
JP Doyon, C Scornavacca, KY Gorbunov, GJ Szöllősi, V Ranwez, V Berry
Comparative Genomics: International Workshop, RECOMB-CG 2010, Ottawa, Canada …, 2010
Models, algorithms and programs for phylogeny reconciliation
JP Doyon, V Ranwez, V Daubin, V Berry
Briefings in bioinformatics 12 (5), 392-400, 2011
On the interpretation of bootstrap trees: appropriate threshold of clade selection and induced gain
V Berry, O Gascuel
Molecular Biology and Evolution 13 (7), 999-1011, 1996
Multiple nuclear genes stabilize the phylogenetic backbone of the genus Quercus
F Hubert, GW Grimm, E Jousselin, V Berry, A Franc, A Kremer
Systematics and Biodiversity 12 (4), 405-423, 2014
One fig to bind them all: host conservatism in a fig wasp community unraveled by cospeciation analyses among pollinating and nonpollinating fig wasps
E Jousselin, S Van Noort, V Berry, JY Rasplus, N Rønsted, JC Erasmus, ...
Evolution 62 (7), 1777-1797, 2008
Inferring evolutionary trees with strong combinatorial evidence
V Berry, O Gascuel
Theoretical computer science 240 (2), 271-298, 2000
SDM: a fast distance-based approach for (super) tree building in phylogenomics
A Criscuolo, V Berry, EJP Douzery, O Gascuel
Systematic Biology 55 (5), 740-755, 2006
Quartet cleaning: improved algorithms and simulations
V Berry, T Jiang, P Kearney, M Li, T Wareham
Algorithms-ESA’99: 7th Annual European Symposium Prague, Czech Republic …, 1999
Computing galled networks from real data
DH Huson, R Rupp, V Berry, P Gambette, C Paul
Bioinformatics 25 (12), i85-i93, 2009
A practical algorithm for recovering the best supported edges of an evolutionary tree
V Berry, D Bryant, T Jiang, PE Kearney, M Li, T Wareham, H Zhang
SODA, 287-296, 2000
Genetic structure and evolution of the Leishmania genus in Africa and Eurasia: what does MLSA tell us
F El Baidouri, L Diancourt, V Berry, F Chevenet, F Pratlong, P Marty, ...
PLoS neglected tropical diseases 7 (6), e2255, 2013
PhySIC_IST: cleaning source trees to infer more informative supertrees
C Scornavacca, V Berry, V Lefort, EJP Douzery, V Ranwez
BMC bioinformatics 9 (413), 1-17, 2008
Inferring evolutionary trees with strong combinatorial evidence
V Berry, O Gascuel
International Computing and Combinatorics Conference, 111-123, 1997
A structured family of clustering and tree construction methods
D Bryant, V Berry
Advances in Applied Mathematics 27 (4), 705-732, 2001
PhySIC: a veto supertree method with desirable properties
V Ranwez, V Berry, A Criscuolo, PH Fabre, S Guillemot, C Scornavacca, ...
Systematic Biology 56 (5), 798-817, 2007
Three New Genome Assemblies Support a Rapid Radiation in Musa acuminata (Wild Banana)
M Rouard, G Droc, G Martin, J Sardos, Y Hueber, V Guignon, A Cenci, ...
Genome biology and evolution 10 (12), 3129-3140, 2018
Representing a set of reconciliations in a compact way
C Scornavacca, W Paprotny, V Berry, V Ranwez
Journal of bioinformatics and computational biology 11 (02), 1250025, 2013
Quartets and unrooted phylogenetic networks
P Gambette, V Berry, C Paul
Journal of bioinformatics and computational biology 10 (04), 1250004, 2012
Faster reliable phylogenetic analysis
V Berry, D Bryant
Proceedings of the third annual international conference on Computational …, 1999
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