Job Dekker
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
120782012
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
E Lieberman-Aiden, NL Van Berkum, L Williams, M Imakaev, T Ragoczy, ...
science 326 (5950), 289-293, 2009
57552009
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
ENCODE Project Consortium
nature 447 (7146), 799, 2007
53742007
Capturing chromosome conformation
J Dekker, K Rippe, M Dekker, N Kleckner
science 295 (5558), 1306-1311, 2002
34112002
The accessible chromatin landscape of the human genome
RE Thurman, E Rynes, R Humbert, J Vierstra, MT Maurano, E Haugen, ...
Nature 489 (7414), 75-82, 2012
24412012
Spatial partitioning of the regulatory landscape of the X-inactivation centre
EP Nora, BR Lajoie, EG Schulz, L Giorgetti, I Okamoto, N Servant, T Piolot, ...
Nature 485 (7398), 381-385, 2012
21792012
Mediator and cohesin connect gene expression and chromatin architecture
MH Kagey, JJ Newman, S Bilodeau, Y Zhan, DA Orlando, NL van Berkum, ...
Nature 467 (7314), 430-435, 2010
18112010
The ENCODE (ENCyclopedia of DNA elements) project
ENCODE Project Consortium
Science 306 (5696), 636-640, 2004
18092004
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
KC Wang, YW Yang, B Liu, A Sanyal, R Corces-Zimmerman, Y Chen, ...
Nature 472 (7341), 120-124, 2011
17672011
The long-range interaction landscape of gene promoters
A Sanyal, BR Lajoie, G Jain, J Dekker
Nature 489 (7414), 109-113, 2012
13972012
Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements
J Dostie, TA Richmond, RA Arnaout, RR Selzer, WL Lee, TA Honan, ...
Genome research 16 (10), 1299-1309, 2006
11672006
Architectural protein subclasses shape 3D organization of genomes during lineage commitment
JE Phillips-Cremins, MEG Sauria, A Sanyal, TI Gerasimova, BR Lajoie, ...
Cell 153 (6), 1281-1295, 2013
10122013
Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data
J Dekker, MA Marti-Renom, LA Mirny
Nature Reviews Genetics 14 (6), 390-403, 2013
9552013
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
M Imakaev, G Fudenberg, RP McCord, N Naumova, A Goloborodko, ...
Nature methods 9 (10), 999-1003, 2012
9212012
Targeted degradation of CTCF decouples local insulation of chromosome domains from genomic compartmentalization
EP Nora, A Goloborodko, AL Valton, JH Gibcus, A Uebersohn, ...
Cell 169 (5), 930-944. e22, 2017
8162017
Organization of the mitotic chromosome
N Naumova, M Imakaev, G Fudenberg, Y Zhan, BR Lajoie, LA Mirny, ...
Science 342 (6161), 948-953, 2013
7642013
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
N Servant, N Varoquaux, BR Lajoie, E Viara, CJ Chen, JP Vert, E Heard, ...
Genome biology 16 (1), 1-11, 2015
7342015
Activation of proto-oncogenes by disruption of chromosome neighborhoods
D Hnisz, AS Weintraub, DS Day, AL Valton, RO Bak, CH Li, J Goldmann, ...
Science 351 (6280), 1454-1458, 2016
6752016
Defining functional DNA elements in the human genome
M Kellis, B Wold, MP Snyder, BE Bernstein, A Kundaje, GK Marinov, ...
Proceedings of the National Academy of Sciences 111 (17), 6131-6138, 2014
6742014
The hierarchy of the 3D genome
JH Gibcus, J Dekker
Molecular cell 49 (5), 773-782, 2013
6552013
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