| Profiling tumor infiltrating immune cells with CIBERSORT B Chen, MS Khodadoust, CL Liu, AM Newman, AA Alizadeh Cancer Systems Biology: Methods and Protocols, 243-259, 2018 | 2215 | 2018 |
| Empath: Understanding topic signals in large-scale text E Fast, B Chen, MS Bernstein Proceedings of the 2016 CHI conference on human factors in computing systems …, 2016 | 464 | 2016 |
| Integrating genomic features for non-invasive early lung cancer detection JJ Chabon, EG Hamilton, DM Kurtz, MS Esfahani, EJ Moding, H Stehr, ... Nature 580 (7802), 245-251, 2020 | 454 | 2020 |
| Antigen presentation profiling reveals recognition of lymphoma immunoglobulin neoantigens MS Khodadoust, N Olsson, LE Wagar, OAW Haabeth, B Chen, ... Nature 543 (7647), 723-727, 2017 | 263 | 2017 |
| Predicting HLA class II antigen presentation through integrated deep learning B Chen, MS Khodadoust, N Olsson, LE Wagar, E Fast, CL Liu, ... Nature biotechnology 37 (11), 1332-1343, 2019 | 245 | 2019 |
| Enhanced detection of minimal residual disease by targeted sequencing of phased variants in circulating tumor DNA DM Kurtz, J Soo, L Co Ting Keh, S Alig, JJ Chabon, BJ Sworder, A Schultz, ... Nature biotechnology 39 (12), 1537-1547, 2021 | 177 | 2021 |
| Iris: A conversational agent for complex tasks E Fast, B Chen, J Mendelsohn, J Bassen, MS Bernstein Proceedings of the 2018 CHI conference on human factors in computing systems …, 2018 | 153 | 2018 |
| Potential T-cell and B-cell epitopes of 2019-nCoV E Fast, RB Altman, B Chen BioRxiv, 2020.02. 19.955484, 2020 | 96 | 2020 |
| Inferring gene expression from cell-free DNA fragmentation profiles MS Esfahani, EG Hamilton, M Mehrmohamadi, BY Nabet, SK Alig, ... Nature biotechnology 40 (4), 585-597, 2022 | 76 | 2022 |
| Multiplex zymography captures stage-specific activity profiles of cathepsins K, L, and S in human breast, lung, and cervical cancer B Chen, MO Platt Journal of translational medicine 9, 1-13, 2011 | 57 | 2011 |
| B-cell lymphomas present immunoglobulin neoantigens MS Khodadoust, N Olsson, B Chen, B Sworder, T Shree, CL Liu, L Zhang, ... Blood, The Journal of the American Society of Hematology 133 (8), 878-881, 2019 | 40 | 2019 |
| Opportunities for developing therapies for rare genetic diseases: focus on gain-of-function and allostery B Chen, RB Altman Orphanet journal of rare diseases 12, 1-7, 2017 | 33 | 2017 |
| Antitumor effects of iPSC-based cancer vaccine in pancreatic cancer X Ouyang, Y Liu, Y Zhou, J Guo, TT Wei, C Liu, B Lee, B Chen, A Zhang, ... Stem cell reports 16 (6), 1468-1477, 2021 | 30 | 2021 |
| Picosecond fluorescence dynamics of tryptophan and 5-fluorotryptophan in monellin: slow water–protein relaxation unmasked J Xu, B Chen, P Callis, PL Muiño, H Rozeboom, J Broos, D Toptygin, ... The Journal of Physical Chemistry B 119 (11), 4230-4239, 2015 | 26 | 2015 |
| Microarchitectural and mechanical characterization of the sickle bone M Green, I Akinsami, A Lin, S Banton, S Ghosh, B Chen, M Platt, ... Journal of the mechanical behavior of biomedical materials 48, 220-228, 2015 | 18 | 2015 |
| Lexicons on Demand: Neural Word Embeddings for Large-Scale Text Analysis. E Fast, B Chen, MS Bernstein IJCAI, 4836-4840, 2017 | 10 | 2017 |
| Phased variant enrichment for enhanced minimal residual disease detection from cell-free DNA DM Kurtz, J Soo, S Alig, LCT Keh, C Macaulay, MC Jin, F Scherer, ... Blood 134, 552, 2019 | 6 | 2019 |
| Distinct chromatin accessibility profiles of lymphoma subtypes revealed by targeted cell free dna profiling M Mehrmohamadi, MS Esfahani, J Soo, F Scherer, JG Schroers-Martin, ... Blood 132, 672, 2018 | 5 | 2018 |
| Maria: accurate prediction of MHC-II peptide presentation with deep-learning and lymphoma patient MHC-II ligandome B Chen, M Khodadoust, N Olsson, E Fast, LE Wagar, CL Liu, M Davis, ... Blood 130, 1486, 2017 | 4 | 2017 |
| Maria-I: a deep-learning approach for accurate prediction of MHC Class I tumor neoantigen presentation KR Kathuria, B Chen, MS Khodadoust, N Olsson, MM Davis, JE Elias, ... Blood 134, 84, 2019 | 2 | 2019 |
Ash A. Alizadeh, MD, PhDStanford University, Moghadam Family Professor of MedicineVerified email at stanford.edu
