| Nextclade: clade assignment, mutation calling and quality control for viral genomes I Aksamentov, C Roemer, EB Hodcroft, RA Neher Journal of Open Source Software, 2021 | 795 | 2021 |
| Emergence of SARS-CoV-2 omicron lineages BA. 4 and BA. 5 in South Africa H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ... Nature medicine 28 (9), 1785-1790, 2022 | 725* | 2022 |
| CoV-Spectrum: analysis of globally shared SARS-CoV-2 data to identify and characterize new variants TS Chaoran Chen, Sarah Nadeau, Michael Yared, Philippe Voinov, Ning Xie ... Bioinformatics, 2021 | 269* | 2021 |
| Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus C Happi, I Adetifa, P Mbala, R Njouom, E Nakoune, A Happi, N Ndodo, ... PLoS biology 20 (8), e3001769, 2022 | 264 | 2022 |
| SARS-CoV-2 evolution in the Omicron era C Roemer, DJ Sheward, R Hisner, F Gueli, H Sakaguchi, N Frohberg, ... Nature microbiology 8 (11), 1952-1959, 2023 | 79* | 2023 |
| Evolution and neutralization escape of the SARS-CoV-2 BA. 2.86 subvariant K Khan, G Lustig, C Römer, K Reedoy, Z Jule, F Karim, Y Ganga, ... Nature Communications 14 (1), 8078, 2023 | 69 | 2023 |
| Viral genetic clustering and transmission dynamics of the 2022 mpox outbreak in Portugal V Borges, MP Duque, JV Martins, P Vasconcelos, R Ferreira, D Sobral, ... Nature Medicine 29 (10), 2509-2517, 2023 | 36 | 2023 |
| Rapid escape of new SARS-CoV-2 Omicron variants from BA. 2-directed antibody responses A Dijokaite-Guraliuc, R Das, D Zhou, HM Ginn, C Liu, HME Duyvesteyn, ... Cell Reports 42 (4), 2023 | 25 | 2023 |
| Standardized phylogenetic classification of human respiratory syncytial virus below the subgroup level S Goya, C Ruis, RA Neher, A Meijer, A Aziz, AS Hinrichs, A von Gottberg, ... Emerging Infectious Diseases 30 (8), 1631, 2024 | 13 | 2024 |
| A framework for automated scalable designation of viral pathogen lineages from genomic data J McBroome, A de Bernardi Schneider, C Roemer, MT Wolfinger, ... Nature Microbiology 9 (2), 550-560, 2024 | 11* | 2024 |
| The unified proposal for classification of human respiratory syncytial virus below the subgroup level S Goya, C Ruis, RA Neher, A Meijer, A Aziz, AS Hinrichs, A von Gottberg, ... medRxiv, 2024.02. 13.24302237, 2024 | 5 | 2024 |
| A highly divergent SARS-CoV-2 lineage B. 1.1 sample in a patient with long-term COVID-19 E Nabieva, AB Komissarov, GV Klink, SV Zaitsev, M Sergeeva, ... medRxiv, 2023.09. 14.23295379, 2023 | 4 | 2023 |
| LAPIS is a fast web API for massive open virus sequencing data C Chen, A Taepper, F Engelniederhammer, J Kellerer, C Roemer, ... BMC bioinformatics 24 (1), 232, 2023 | 2* | 2023 |
Emma B HodcroftAssistant Professor, Swiss Tropical and Public Health Institute, University of BaselVerified email at unibas.ch
