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Cornelius Roemer
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Emergence of SARS-CoV-2 omicron lineages BA. 4 and BA. 5 in South Africa
H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ...
Nature medicine 28 (9), 1785-1790, 2022
602*2022
Nextclade: clade assignment, mutation calling and quality control for viral genomes
I Aksamentov, C Roemer, EB Hodcroft, RA Neher
Journal of Open Source Software, 2021
5862021
CoV-Spectrum: analysis of globally shared SARS-CoV-2 data to identify and characterize new variants
TS Chaoran Chen, Sarah Nadeau, Michael Yared, Philippe Voinov, Ning Xie ...
Bioinformatics, 2021
203*2021
Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus
C Happi, I Adetifa, P Mbala, R Njouom, E Nakoune, A Happi, N Ndodo, ...
PLoS biology 20 (8), e3001769, 2022
1952022
SARS-CoV-2 evolution in the Omicron era
C Roemer, DJ Sheward, R Hisner, F Gueli, H Sakaguchi, N Frohberg, ...
Nature microbiology 8 (11), 1952-1959, 2023
33*2023
Evolution and neutralization escape of the SARS-CoV-2 BA. 2.86 subvariant
K Khan, G Lustig, C Römer, K Reedoy, Z Jule, F Karim, Y Ganga, ...
Nature Communications 14 (1), 8078, 2023
262023
Rapid escape of new SARS-CoV-2 Omicron variants from BA. 2-directed antibody responses
A Dijokaite-Guraliuc, R Das, D Zhou, HM Ginn, C Liu, HME Duyvesteyn, ...
Cell reports 42 (4), 2023
152023
Viral genetic clustering and transmission dynamics of the 2022 mpox outbreak in Portugal
V Borges, MP Duque, JV Martins, P Vasconcelos, R Ferreira, D Sobral, ...
Nature Medicine 29 (10), 2509-2517, 2023
102023
A framework for automated scalable designation of viral pathogen lineages from genomic data
J McBroome, A de Bernardi Schneider, C Roemer, MT Wolfinger, ...
Nature Microbiology, 1-11, 2024
2*2024
LAPIS is a fast web API for massive open virus sequencing data
C Chen, A Taepper, F Engelniederhammer, J Kellerer, C Roemer, ...
BMC bioinformatics 24 (1), 232, 2023
2*2023
The unified proposal for classification of human respiratory syncytial virus below the subgroup level
S Goya, C Ruis, RA Neher, A Meijer, A Aziz, AS Hinrichs, A von Gottberg, ...
medRxiv, 2024.02. 13.24302237, 2024
12024
A highly divergent SARS-CoV-2 lineage B. 1.1 sample in a patient with long-term COVID-19
E Nabieva, AB Komissarov, GV Klink, SV Zaitsev, M Sergeeva, ...
medRxiv, 2023.09. 14.23295379, 2023
12023
The unified proposal for classification of human respiratory syncytial virus below the subgroup level (preprint)
S Goya, C Ruis, R Neher, A Meijer, A Aziz, A Hinrichs, A von Gottberg, ...
2024
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