Aude Bernheim
Aude Bernheim
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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
D Couvin, A Bernheim, C Toffano-Nioche, M Touchon, J Michalik, ...
Nucleic acids research 46 (W1), W246-W251, 2018
Genetic and life-history traits associated with the distribution of prophages in bacteria
M Touchon, A Bernheim, EPC Rocha
The ISME journal 10 (11), 2744-2754, 2016
The pan-immune system of bacteria: antiviral defence as a community resource
A Bernheim, R Sorek
Nature Reviews Microbiology 18 (2), 113-119, 2020
Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria
A Bernheim, A Calvo-Villamañán, C Basier, L Cui, EPC Rocha, ...
Nature communications 8 (1), 1-9, 2017
A eukaryotic-like serine/threonine kinase protects Staphylococci against phages
F Depardieu, JP Didier, A Bernheim, A Sherlock, H Molina, B Duclos, ...
Cell host & microbe 20 (4), 471-481, 2016
Silencing of Antibiotic Resistance in E. coli with Engineered Phage Bearing Small Regulatory RNAs
VK Libis, AG Bernheim, C Basier, S Jaramillo-Riveri, M Deyell, ...
ACS synthetic biology 3 (12), 1003-1006, 2014
Bacterial retrons function in anti-phage defense
A Millman, A Bernheim, A Stokar-Avihail, T Fedorenko, M Voichek, ...
Cell 183 (6), 1551-1561. e12, 2020
Genetic exchanges are more frequent in bacteria encoding capsules
O Rendueles, JAM de Sousa, A Bernheim, M Touchon, EPC Rocha
PLoS genetics 14 (12), e1007862, 2018
A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria
A Bernheim, D Bikard, M Touchon, EPC Rocha
Philosophical Transactions of the Royal Society B 374 (1772), 20180088, 2019
Prokaryotic viperins produce diverse antiviral molecules
A Bernheim, A Millman, G Ofir, G Meitav, C Avraham, H Shomar, ...
Nature 589 (7840), 120-124, 2021
Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements
A Bernheim, D Bikard, M Touchon, EPC Rocha
Nucleic acids research 48 (2), 748-760, 2020
Phage-mediated delivery of targeted sRNA constructs to knock down gene expression in E. coli
AG Bernheim, VK Libis, AB Lindner, EH Wintermute
Journal of visualized experiments: JoVE, 2016
Viruses cooperate to defeat bacteria
A Bernheim, R Sorek
Nature 559 (7715), 482-484, 2018
Prophage-encoded hotspots of bacterial immune systems
F Rousset, J Dowding, A Bernheim, E Rocha, D Bikard
bioRxiv, 2021
In Situ Characterization of Mycobacterial Growth Inhibition by Lytic Enzymes Expressed in Vectorized E. coli
I Atanaskovic, AC Bencherif, M Deyell, S Jaramillo-Riveri, M Benony, ...
ACS synthetic biology 3 (12), 932-934, 2014
The distribution of CRISPR-Cas systems is affected by interactions with DNA repair pathways
A Bernheim
Université Sorbonne Paris Cité, 2017
Methods for the Analysis and Characterization of Defense Mechanisms Against Horizontal Gene Transfer: CRISPR Systems
A Calvo-Villamañán, A Bernheim, D Bikard
Horizontal Gene Transfer, 235-249, 2020
Engineering gene overlaps to sustain genetic constructs in vivo
AL Decrulle, A Frenoy, TA Meiller-Legrand, A Bernheim, C Lotton, ...
bioRxiv, 659243, 2019
Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria.
EPC Rocha, M Touchon, A Bernheim, A Calvo-Villamañán, C Basier, ...
Nature Communications 8 (1), 2017
Incontournables et pourtant rares: les déterminants de la distribution des systèmes CRISPR-Cas dans les génomes bactériens
A Bernheim
Biologie Aujourd'hui 211 (4), 255-264, 2017
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