Aude Bernheim
Aude Bernheim
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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
D Couvin, A Bernheim, C Toffano-Nioche, M Touchon, J Michalik, ...
Nucleic acids research 46 (W1), W246-W251, 2018
The pan-immune system of bacteria: antiviral defence as a community resource
A Bernheim, R Sorek
Nature Reviews Microbiology 18 (2), 113-119, 2020
Genetic and life-history traits associated with the distribution of prophages in bacteria
M Touchon, A Bernheim, EPC Rocha
The ISME journal 10 (11), 2744-2754, 2016
Bacterial retrons function in anti-phage defense
A Millman, A Bernheim, A Stokar-Avihail, T Fedorenko, M Voichek, ...
Cell 183 (6), 1551-1561. e12, 2020
Systematic and quantitative view of the antiviral arsenal of prokaryotes
F Tesson, A Hervé, E Mordret, M Touchon, C d’Humières, J Cury, ...
Nature communications 13 (1), 2561, 2022
Prokaryotic viperins produce diverse antiviral molecules
A Bernheim, A Millman, G Ofir, G Meitav, C Avraham, H Shomar, ...
Nature 589 (7840), 120-124, 2021
An expanded arsenal of immune systems that protect bacteria from phages
A Millman, S Melamed, A Leavitt, S Doron, A Bernheim, J Hör, J Garb, ...
Cell host & microbe 30 (11), 1556-1569. e5, 2022
Phages and their satellites encode hotspots of antiviral systems
F Rousset, F Depardieu, S Miele, J Dowding, AL Laval, E Lieberman, ...
Cell host & microbe 30 (5), 740-753. e5, 2022
A eukaryotic-like serine/threonine kinase protects staphylococci against phages
F Depardieu, JP Didier, A Bernheim, A Sherlock, H Molina, B Duclos, ...
Cell host & microbe 20 (4), 471-481, 2016
Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria
A Bernheim, A Calvo-Villamañán, C Basier, L Cui, EPC Rocha, ...
Nature communications 8 (1), 2094, 2017
Multiple phage resistance systems inhibit infection via SIR2-dependent NAD+ depletion
J Garb, A Lopatina, A Bernheim, M Zaremba, V Siksnys, S Melamed, ...
Nature microbiology 7 (11), 1849-1856, 2022
Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements
A Bernheim, D Bikard, M Touchon, EPC Rocha
Nucleic acids research 48 (2), 748-760, 2020
The highly diverse antiphage defence systems of bacteria
H Georjon, A Bernheim
Nature Reviews Microbiology 21 (10), 686-700, 2023
Genetic exchanges are more frequent in bacteria encoding capsules
O Rendueles, JAM de Sousa, A Bernheim, M Touchon, EPC Rocha
PLoS genetics 14 (12), e1007862, 2018
Evolutionary and mechanistic diversity of Type IF CRISPR-associated transposons
SE Klompe, N Jaber, LY Beh, JT Mohabir, A Bernheim, SH Sternberg
Molecular Cell 82 (3), 616-628. e5, 2022
Silencing of Antibiotic Resistance in E. coli with Engineered Phage Bearing Small Regulatory RNAs
VK Libis, AG Bernheim, C Basier, S Jaramillo-Riveri, M Deyell, ...
ACS synthetic biology 3 (12), 1003-1006, 2014
A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria
A Bernheim, D Bikard, M Touchon, EPC Rocha
Philosophical Transactions of the Royal Society B 374 (1772), 20180088, 2019
Synergy and regulation of antiphage systems: toward the existence of a bacterial immune system?
F Tesson, A Bernheim
Current Opinion in Microbiology 71, 102238, 2023
Viruses cooperate to defeat bacteria
A Bernheim, R Sorek
Nature 559 (7715), 482-484, 2018
Conservation of antiviral systems across domains of life reveals novel immune mechanisms in humans
J Cury, E Mordret, VH Trejo, F Tesson, G Ofir, EZ Poirier, A Bernheim
bioRxiv, 2022.12. 12.520048, 2022
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