Suivre
Bérénice Batut
Bérénice Batut
Freiburg Galaxy team - Bioinformatics - University of Freiburg
Adresse e-mail validée de informatik.uni-freiburg.de - Page d'accueil
Titre
Citée par
Citée par
Année
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic acids research 46 (W1), W537-W544, 2018
37082018
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
7892018
Community-driven data analysis training for biology
B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ...
Cell systems 6 (6), 752-758. e1, 2018
1692018
Reductive genome evolution at both ends of the bacterial population size spectrum
B Batut, C Knibbe, G Marais, V Daubin
Nature Reviews Microbiology 12 (12), 841-850, 2014
1662014
Four simple recommendations to encourage best practices in research software
RC Jiménez, M Kuzak, M Alhamdoosh, M Barker, B Batut, M Borg, ...
F1000Research 6, 2017
1282017
Gut microbiota drives age-related oxidative stress and mitochondrial damage in microglia via the metabolite N6-carboxymethyllysine
O Mossad, B Batut, B Yilmaz, N Dokalis, C Mezö, E Nent, LS Nabavi, ...
Nature neuroscience 25 (3), 295-305, 2022
942022
In silico experimental evolution: a tool to test evolutionary scenarios
B Batut, DP Parsons, S Fischer, G Beslon, C Knibbe
BMC bioinformatics 14, 1-11, 2013
672013
Environmental pollutant benzo [a] pyrene impacts the volatile metabolome and transcriptome of the human gut microbiota
C Defois, E Peyretaillade, P Peyret
Frontiers in Microbiology 8, 275473, 2017
602017
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy
BA Grüning, J Fallmann, D Yusuf, S Will, A Erxleben, F Eggenhofer, ...
Nucleic acids research 45 (W1), W560-W566, 2017
482017
Ten simple rules for making training materials FAIR
L Garcia, B Batut, ML Burke, M Kuzak, F Psomopoulos, R Arcila, ...
PLOS Computational Biology 16 (5), e1007854, 2020
402020
A single-cell RNA-sequencing training and analysis suite using the Galaxy framework
M Tekman, B Batut, A Ostrovsky, C Antoniewski, D Clements, F Ramirez, ...
GigaScience 9 (10), giaa102, 2020
272020
ASaiM: a Galaxy-based framework to analyze microbiota data
B Batut, K Gravouil, C Defois, S Hiltemann, JF Brugère, E Peyretaillade, ...
GigaScience 7 (6), giy057, 2018
262018
RNA-seq data analysis in Galaxy
B Batut, M van den Beek, MA Doyle, N Soranzo
RNA Bioinformatics, 367-392, 2021
252021
Galaxy Training: A powerful framework for teaching!
S Hiltemann, H Rasche, S Gladman, HR Hotz, D Larivière, D Blankenberg, ...
PLoS computational biology 19 (1), e1010752, 2023
242023
Fostering accessible online education using Galaxy as an e-learning platform
B Serrano-Solano, MC Föll, C Gallardo-Alba, A Erxleben, H Rasche, ...
PLoS computational biology 17 (5), e1008923, 2021
162021
The RNA workbench 2.0: next generation RNA data analysis
J Fallmann, P Videm, A Bagnacani, B Batut, MA Doyle, T Klingstrom, ...
Nucleic acids research 47 (W1), W511-W515, 2019
102019
ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework
S Mehta, M Crane, E Leith, B Batut, S Hiltemann, MØ Arntzen, BJ Kunath, ...
F1000Research 10, 2021
82021
Genome evolution: mutation is the main driver of genome size in prokaryotes
GAB Marais, B Batut, V Daubin
Current Biology 30 (19), R1083-R1085, 2020
82020
Hands-on: Hands-on: Reference-based RNA-Seq data analysis
B Batut, M Freeberg, M Heydarian, A Erxleben, P Videm, C Blank, ...
Galaxy Training Network, 2024
62024
Exchange of clinical and omics data according to FAIR principles: a review of open source solutions
P Pugliese, C Knell, J Christoph
Methods of Information in Medicine 59 (S 01), e13-e20, 2020
62020
Le système ne peut pas réaliser cette opération maintenant. Veuillez réessayer plus tard.
Articles 1–20