Camille Marchet
Camille Marchet
Post-Doc BONSAI CRISTAL (Lille, France)
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TitreCitée parAnnée
SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence
H Lopez-Maestre, L Brinza, C Marchet, J Kielbassa, S Bastien, ...
Nucleic Acids Research 44 (19), e148-e148, 2016
A resource-frugal probabilistic dictionary and applications in bioinformatics
C Marchet, L Lecompte, A Limasset, L Bittner, P Peterlongo
Discrete Applied Mathematics, 2018
Navigating in a sea of repeats in rna-seq without drowning
G Sacomoto, B Sinaimeri, C Marchet, V Miele, MF Sagot, V Lacroix
International Workshop on Algorithms in Bioinformatics, 82-96, 2014
A resource-frugal probabilistic dictionary and applications in (meta) genomics
C Marchet, A Limasset, L Bittner, P Peterlongo
arXiv preprint arXiv:1605.08319, 2016
De novo clustering of long reads by gene from transcriptomics data
C Marchet, L Lecompte, CD Silva, C Cruaud, JM Aury, J Nicolas, ...
Nucleic acids research 47 (1), e2-e2, 2018
Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads
Y Le Bras, O Collin, C Monjeaud, V Lacroix, É Rivals, C Lemaitre, V Miele, ...
GigaScience 5 (1), 9, 2016
Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads
L Lima, B Sinaimeri, G Sacomoto, H Lopez-Maestre, C Marchet, V Miele, ...
Algorithms for Molecular Biology 12 (1), 2, 2017
A de novo approach to disentangle partner identity and function in holobiont systems
A Meng, C Marchet, E Corre, P Peterlongo, A Alberti, C Da Silva, ...
Microbiome 6 (1), 105, 2018
Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data
C Benoit-Pilven, C Marchet, E Chautard, L Lima, MP Lambert, ...
Scientific Reports 8 (1), 4307, 2018
ELECTOR: Evaluator for long reads correction methods
C Marchet, P Morisse, L Lecompte, A Limasset, A Lefebvre, T Lecroq, ...
bioRxiv, 512889, 2019
From reads to transcripts: de novo methods for the analysis of transcriptome second and third generation sequencing.
C Marchet
Université de Rennes 1, 2018
CARNAC-LR: Clustering coefficient-based Acquisition of RNA Communities in Long Reads
C Marchet, L Lecompte, C Da Silva, C Cruaud, JM Aury, J Nicolas, ...
JOBIM, 2018
ELECTOR: EvaLuation of Error Correction Tools for lOng Reads
L Lecompte, C Marchet, P Morisse, A Limasset, P Peterlongo, A Lefebvre, ...
JOBIM, 2018
Simulation of RNA sequencIng with Oxford Nanopore Technologies
C Marchet, L Lima
JOBIM, 2018
CARNAC-LR: De novo Clustering of Gene Expressed Variants in Transcriptomic Long Reads Data Sets
C Marchet, L Lecompte, C Da Silva, C Cruaud, JM Aury, J Nicolas, ...
RECOMB-seq, 2018
Comparative assessment of long-read error-correction software applied to RNA-sequencing data
LIS de Lima, C Marchet, S Caboche, C Da Silva, B Istace, JM Aury, ...
bioRxiv, 476622, 2018
A Meng, E Corre, P Peterlongo, C Marchet, A Alberti, C Da Silva, ...
International Conference on Holobionts, 2017
Minimal perfect hash functions in large scale bioinformatics problems
A Limasset, C Marchet, P Peterlongo, L Bittner
JOBIM 2016, 2016
A highly scalable data structure for read similarity computation and its application to marine plankton holobionts Camille Marchet⋆†, Arnaud Meng3†, Erwan Corre3, Stéphane Le Crom4
F Not, L Bittner, P Peterlongo
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