| Integrative analysis of 111 reference human epigenomes A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ... Nature 518 (7539), 317-330, 2015 | 5941 | 2015 |
| Genetic effects on gene expression across human tissues GTEx Consortium Lead analysts: Aguet François 1 Brown Andrew A. 2 3 4 Castel ... Nature 550 (7675), 204-213, 2017 | 3255 | 2017 |
| Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 1153 | 2020 |
| Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics AN Barbeira, SP Dickinson, R Bonazzola, J Zheng, HE Wheeler, ... Nature communications 9 (1), 1825, 2018 | 833 | 2018 |
| Landscape of X chromosome inactivation across human tissues T Tukiainen, AC Villani, A Yen, MA Rivas, JL Marshall, R Satija, M Aguirre, ... Nature 550 (7675), 244-248, 2017 | 829 | 2017 |
| Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina–associated domains BP Berman, DJ Weisenberger, JF Aman, T Hinoue, Z Ramjan, Y Liu, ... Nature genetics 44 (1), 40-46, 2012 | 693 | 2012 |
| Dynamic landscape and regulation of RNA editing in mammals MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ... Nature 550 (7675), 249-254, 2017 | 528 | 2017 |
| Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules TK Kelly*, Y Liu*, FD Lay, G Liang, BP Berman, PA Jones Genome research 22 (12), 2497-2506, 2012 | 458 | 2012 |
| Using an atlas of gene regulation across 44 human tissues to inform complex disease-and trait-associated variation ER Gamazon, AV Segrè, M Van De Bunt, X Wen, HS Xi, F Hormozdiari, ... Nature genetics 50 (7), 956-967, 2018 | 415 | 2018 |
| Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data Y Liu, KD Siegmund, PW Laird, BP Berman Genome biology 13, 1-14, 2012 | 296 | 2012 |
| The impact of rare variation on gene expression across tissues X Li, Y Kim, EK Tsang, JR Davis, FN Damani, C Chiang, GT Hess, ... Nature 550 (7675), 239-243, 2017 | 258 | 2017 |
| Estimating the causal tissues for complex traits and diseases H Ongen, AA Brown, O Delaneau, NI Panousis, AC Nica, ... Nature genetics 49 (12), 1676-1683, 2017 | 190 | 2017 |
| Joint profiling of DNA methylation and chromatin architecture in single cells G Li*, Y Liu*, Y Zhang, N Kubo, M Yu, R Fang, M Kellis, B Ren Nature methods 16 (10), 991-993, 2019 | 174 | 2019 |
| Identification and characterization of novel amphioxus microRNAs by Solexa sequencing X Chen, Q Li, J Wang, X Guo, X Jiang, Z Ren, C Weng, G Sun, X Wang, ... Genome biology 10, 1-13, 2009 | 167 | 2009 |
| Co-expression networks reveal the tissue-specific regulation of transcription and splicing A Saha, Y Kim, ADH Gewirtz, B Jo, C Gao, IC McDowell, BE Engelhardt, ... Genome research 27 (11), 1843-1858, 2017 | 165 | 2017 |
| Enhancing GTEx by bridging the gaps between genotype, gene expression, and disease Nature genetics 49 (12), 1664-1670, 2017 | 138 | 2017 |
| Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA N Wan, D Weinberg, TY Liu, K Niehaus, EA Ariazi, D Delubac, A Kannan, ... BMC cancer 19, 1-10, 2019 | 136 | 2019 |
| The role of DNA methylation in directing the functional organization of the cancer epigenome FD Lay*, Y Liu*, TK Kelly, H Witt, PJ Farnham, PA Jones, BP Berman Genome research 25 (4), 467-477, 2015 | 103 | 2015 |
| Perspectives on ENCODE MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ... Nature 583 (7818), 693-698, 2020 | 91 | 2020 |
| Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis F Yang, J Wang, BL Pierce, LS Chen, F Aguet, KG Ardlie, BB Cummings, ... Genome research 27 (11), 1859-1871, 2017 | 67 | 2017 |
Benjamin P BermanAssociate Professor, The Hebrew University of Jerusalem School of MedicineVerified email at mail.huji.ac.il
