Jean-Philippe Vert

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laurent jacobCNRS, Université Lyon 1Verified email at univ-lyon1.fr
Francis BachInria - Ecole Normale SupérieureVerified email at inria.fr
William Stafford NobleProfessor of Genome Sciences, University of WashingtonVerified email at uw.edu
Koji TsudaProfessor, GSFS, The University of TokyoVerified email at k.u-tokyo.ac.jp
Bernhard SchölkopfDirector, Max Planck Institute for Intelligent Systems; Professor at ETH Zürich, and DistinguishedVerified email at tuebingen.mpg.de
Tatsuya AkutsuProfessor, Bioinformatics Center, Institute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Emmanuel BarillotInstitut Curie, INSERM, Mines ParisTech, U900Verified email at curie.fr
Marco CuturiGoogle Brain / CREST-ENSAE.Verified email at google.com
Nelle VaroquauxCNRS, Université Grenoble AlpesVerified email at univ-grenoble-alpes.fr
Pierre MahébioMérieuxVerified email at biomerieux.com
Minoru KanehisaProfessor, Institute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Andrei ZinovyevScientific coordinator of cancer systems biology at Institut Curie, PRAIRIE chairVerified email at curie.fr
kevin bleakleyINRIA, FranceVerified email at inria.fr
Hiroto SaigoKyushu UniversityVerified email at inf.kyushu-u.ac.jp
Yoshihiro YamanishiKyushu Institute of TechnologyVerified email at bio.kyutech.ac.jp
Mikhail ZaslavskiyVerified email at ensmp.fr
Valentina BoevaAssistant Prof., ETH Zürich, Department of Computer ScienceVerified email at inf.ethz.ch
G StolovitzkyProgram Director, Translational Systems Biology and NanobiotechnologyVerified email at us.ibm.com
Theodoros EvgeniouINSEADVerified email at insead.edu
Jacob AbernethyAssistant Professor, University of MichiganVerified email at umich.edu

Jean-Philippe Vert

Google Brain / Mines ParisTech

Verified email at mines-paristech.fr - Homepage

machine learning computational biology statistics bioinformatics artificial intelligence


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Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012	1367	2012
Group lasso with overlap and graph lasso L Jacob, G Obozinski, JP Vert Proceedings of the 26th annual international conference on machine learning …, 2009	983	2009
Kernel methods in computational biology B Schölkopf, K Tsuda, JP Vert MIT press, 2004	864	2004
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing N Servant, N Varoquaux, BR Lajoie, E Viara, CJ Chen, JP Vert, E Heard, ... Genome biology 16 (1), 1-11, 2015	678	2015
A community effort to assess and improve drug sensitivity prediction algorithms Nature Biotechnology 32, 1202-1212, 2014	524	2014
Clustered multitask learning: A convex relaxation L Jacob, F Bach, JP Vert Advances in Neural Information Processing Systems 21, 2009	473*	2009
Protein homology detection using string alignment kernels H Saigo, JP Vert, N Ueda, T Akutsu Bioinformatics 20 (11), 1682-1689, 2004	469	2004
Support vector machine applications in computational biology WS Noble Kernel methods in computational biology 71, 92, 2004	393	2004
A primer on kernel methods JP Vert, K Tsuda, B Schölkopf Kernel methods in computational biology 47, 35-70, 2004	380	2004
A path following algorithm for the graph matching problem M Zaslavskiy, F Bach, JP Vert IEEE Transactions on Pattern Analysis and Machine Intelligence 31 (12), 2227 …, 2008	379	2008
The influence of feature selection methods on accuracy, stability and interpretability of molecular signatures AC Haury, P Gestraud, JP Vert PloS one 6 (12), e28210, 2011	358	2011
Protein-ligand interaction prediction: an improved chemogenomics approach L Jacob, JP Vert Bioinformatics 24 (19), 2149-2156, 2008	323	2008
Consistency of random forests E Scornet, G Biau, JP Vert Annals of Statistics 43 (4), 1716-1741, 2015	320	2015
Classification of microarray data using gene networks F Rapaport, A Zinovyev, M Dutreix, E Barillot, JP Vert BMC bioinformatics 8 (1), 1-15, 2007	305	2007
TIGRESS: trustful inference of gene regulation using stability selection AC Haury, F Mordelet, P Vera-Licona, JP Vert BMC systems biology 6 (1), 1-17, 2012	300	2012
Protein network inference from multiple genomic data: a supervised approach Y Yamanishi, JP Vert, M Kanehisa Bioinformatics 20 (suppl_1), i363-i370, 2004	294	2004
A general and flexible method for signal extraction from single-cell RNA-seq data D Risso, F Perraudeau, S Gribkova, S Dudoit, JP Vert Nature communications 9 (1), 1-17, 2018	292*	2018
A New Approach to Collaborative Filtering: Operator Estimation with Spectral Regularization. J Abernethy, F Bach, T Evgeniou, JP Vert Journal of Machine Learning Research 10 (3), 2009	280	2009
An accurate and interpretable model for siRNA efficacy prediction JP Vert, N Foveau, C Lajaunie, Y Vandenbrouck BMC bioinformatics 7 (1), 1-17, 2006	275	2006
Graph kernels based on tree patterns for molecules P Mahé, JP Vert Machine learning 75 (1), 3-35, 2009	269	2009

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