| Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? F Boyer, G Fichant, J Berthod, Y Vandenbrouck, I Attree BMC genomics 10, 1-14, 2009 | 633 | 2009 |
| An accurate and interpretable model for siRNA efficacy prediction JP Vert, N Foveau, C Lajaunie, Y Vandenbrouck BMC bioinformatics 7, 1-17, 2006 | 353 | 2006 |
| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update Nucleic Acids Research 50 (W1), W345-W351, 2022 | 210 | 2022 |
| A high-stringency blueprint of the human proteome S Adhikari, EC Nice, EW Deutsch, L Lane, GS Omenn, SR Pennington, ... Nature communications 11 (1), 5301, 2020 | 180 | 2020 |
| Human proteome project mass spectrometry data interpretation guidelines 2.1 EW Deutsch, CM Overall, JE Van Eyk, MS Baker, YK Paik, ST Weintraub, ... Journal of proteome research 15 (11), 3961-3970, 2016 | 162 | 2016 |
| The Genexpress IMAGE knowledge base of the human brain transcriptome: a prototype integrated resource for functional and computational genomics G Piétu, R Mariage-Samson, NA Fayein, C Matingou, E Eveno, ... Genome research 9 (2), 195-209, 1999 | 111 | 1999 |
| Advances and utility of the human plasma proteome EW Deutsch, GS Omenn, Z Sun, M Maes, M Pernemalm, KK Palaniappan, ... Journal of proteome research 20 (12), 5241-5263, 2021 | 108 | 2021 |
| Proteomic characterization of Pseudomonas aeruginosa PAO1 inner membrane MG Casabona, Y Vandenbrouck, I Attree, Y Couté Proteomics 13 (16), 2419-2423, 2013 | 103 | 2013 |
| Unbalanced expression of CK2 kinase subunits is sufficient to drive epithelial-to-mesenchymal transition by Snail1 induction A Deshiere, E Duchemin-Pelletier, E Spreux, D Ciais, F Combes, ... Oncogene 32 (11), 1373-1383, 2013 | 96 | 2013 |
| Human proteome project mass spectrometry data interpretation guidelines 3.0 EW Deutsch, L Lane, CM Overall, N Bandeira, MS Baker, C Pineau, ... Journal of proteome research 18 (12), 4108-4116, 2019 | 93 | 2019 |
| Guidelines for reporting the use of mass spectrometry informatics in proteomics. PA Binz, R Barkovich, RC Beavis, D Creasy, DM Horn, RK Julian Jr, ... Nature biotechnology 26 (8), 862-863, 2008 | 78 | 2008 |
| Looking for missing proteins in the proteome of human spermatozoa: an update Y Vandenbrouck, L Lane, C Carapito, P Duek, K Rondel, C Bruley, ... Journal of proteome research 15 (11), 3998-4019, 2016 | 75 | 2016 |
| Investigating the macropinocytic proteome of Dictyostelium amoebae by high‐resolution mass spectrometry A Journet, G Klein, S Brugière, Y Vandenbrouck, A Chapel, S Kieffer, ... Proteomics 12 (2), 241-245, 2012 | 53 | 2012 |
| Computational and mass-spectrometry-based workflow for the discovery and validation of missing human proteins: application to chromosomes 2 and 14 C Carapito, L Lane, M Benama, A Opsomer, E Mouton-Barbosa, ... Journal of proteome research 14 (9), 3621-3634, 2015 | 44 | 2015 |
| Protocadherin 12 deficiency alters morphogenesis and transcriptional profile of the placenta C Rampon, S Bouillot, A Climescu-Haulica, MH Prandini, F Cand, ... Physiological genomics 34 (2), 193-204, 2008 | 40 | 2008 |
| Uranium perturbs signaling and iron uptake response in Arabidopsis thaliana roots F Doustaly, F Combes, JB Fiévet, S Berthet, V Hugouvieux, O Bastien, ... Metallomics 6 (4), 809-821, 2014 | 38 | 2014 |
| Proteomic characterization of human exhaled breath condensate M Lacombe, C Marie-Desvergne, F Combes, A Kraut, C Bruley, ... Journal of breath research 12 (2), 021001, 2018 | 37 | 2018 |
| PepLine: a software pipeline for high-throughput direct mapping of tandem mass spectrometry data on genomic sequences M Ferro, M Tardif, E Reguer, R Cahuzac, C Bruley, T Vermat, E Nugues, ... Journal of proteome research 7 (5), 1873-1883, 2008 | 37 | 2008 |
| Bioinformatics tools and workflow to select blood biomarkers for early cancer diagnosis: an application to pancreatic cancer Y Vandenbrouck, D Christiany, F Combes, V Loux, V Brun Proteomics 19 (21-22), 1800489, 2019 | 27 | 2019 |
| DSIR: assessing the design of highly potent siRNA by testing a set of cancer-relevant target genes O Filhol, D Ciais, C Lajaunie, P Charbonnier, N Foveau, JP Vert, ... PloS one 7 (10), e48057, 2012 | 27 | 2012 |
Lydie LaneFaculty of medicine, University of Geneva and SIB Swiss Institute of BioinformaticsVerified email at sib.swiss
