| DGIdb 3.0: a redesign and expansion of the drug–gene interaction database KC Cotto, AH Wagner, YY Feng, S Kiwala, AC Coffman, G Spies, ... Nucleic acids research 46 (D1), D1068-D1073, 2018 | 754 | 2018 |
| Integration of the Drug–Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts SL Freshour, S Kiwala, KC Cotto, AC Coffman, JF McMichael, JJ Song, ... Nucleic acids research 49 (D1), D1144-D1151, 2021 | 540 | 2021 |
| ORegAnno 3.0: a community-driven resource for curated regulatory annotation R Lesurf, KC Cotto, G Wang, M Griffith, K Kasaian, SJM Jones, ... Nucleic acids research 44 (D1), D126-D132, 2016 | 177 | 2016 |
| Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer KC Cotto, YY Feng, A Ramu, M Richters, SL Freshour, ZL Skidmore, H Xia, ... Nature Communications 14, 2023 | 95* | 2023 |
| Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples EK Barnell, P Ronning, KM Campbell, K Krysiak, BJ Ainscough, LM Sheta, ... Genetics in Medicine 21 (4), 972-981, 2019 | 75 | 2019 |
| CIViCpy: a python software development and analysis toolkit for the CIViC knowledgebase AH Wagner, S Kiwala, AC Coffman, JF McMichael, KC Cotto, TB Mooney, ... JCO Clinical Cancer Informatics 4, 245-253, 2020 | 12 | 2020 |
| Computational prediction of MHC anchor locations guides neoantigen identification and prioritization H Xia, J McMichael, M Becker-Hapak, OC Onyeador, R Buchli, E McClain, ... Science immunology 8 (82), eabg2200, 2023 | 11 | 2023 |
| Distinct clonal identities of B-ALLs arising after lenolidomide therapy for multiple myeloma EK Barnell, ZL Skidmore, KF Newcomer, M Chavez, KM Campbell, ... Blood Advances 7 (2), 236-245, 2023 | 10 | 2023 |
| CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase K Krysiak, AM Danos, J Saliba, JF McMichael, AC Coffman, S Kiwala, ... Nucleic acids research 51 (D1), D1230-D1241, 2023 | 9 | 2023 |
| DGIdb 5.0: rebuilding the drug–gene interaction database for precision medicine and drug discovery platforms M Cannon, J Stevenson, K Stahl, R Basu, A Coffman, S Kiwala, ... Nucleic Acids Research 52 (D1), D1227-D1235, 2024 | 8 | 2024 |
| Exploring the genomic landscape of cancer patient cohorts with GenVisR ZL Skidmore, KM Campbell, KC Cotto, M Griffith, OL Griffith Current protocols 1 (9), e252, 2021 | 7 | 2021 |
| Personalized ctDNA micro-panels can monitor and predict clinical outcomes for patients with triple-negative breast cancer EK Barnell, B Fisk, ZL Skidmore, KC Cotto, A Basu, A Anand, MM Richters, ... Scientific reports 12 (1), 17732, 2022 | 6 | 2022 |
| Genomic and transcriptomic somatic alterations of hepatocellular carcinoma in non-cirrhotic livers ZL Skidmore, J Kunisaki, Y Lin, KC Cotto, EK Barnell, J Hundal, K Krysiak, ... Cancer genetics 264, 90-99, 2022 | 4 | 2022 |
| A community approach to the cancer-variant-interpretation bottleneck K Krysiak, AM Danos, S Kiwala, JF McMichael, AC Coffman, EK Barnell, ... Nature cancer 3 (5), 522-525, 2022 | 3 | 2022 |
| RegTools: Integrative analysis of genomic and transcriptomic data to identify splice altering mutations across 35 cancer types KC Cotto, YY Feng, ZL Skidmore, A Ramu, J Kunisaki, DF Conrad, Y Lin, ... Cancer Research 80 (16_Supplement), 2136-2136, 2020 | 3 | 2020 |
| Open-sourced CIViC annotation pipeline to identify and annotate clinically relevant variants using single-molecule molecular inversion probes EK Barnell, A Waalkes, MC Mosior, K Penewit, KC Cotto, AM Danos, ... JCO Clinical Cancer Informatics 3, 1-12, 2019 | 3 | 2019 |
| In Silico Epitope Prediction Analyses Highlight the Potential for Distracting Antigen Immunodominance with Allogeneic Cancer Vaccines CA James, P Ronning, D Cullinan, KC Cotto, EK Barnell, KM Campbell, ... Cancer research communications 1 (2), 115-126, 2021 | 1 | 2021 |
| 65. Accurate neoantigen prediction depends on mutation position relative to patient-specific MHC anchor locations H Xia, M Richters, C Ramirez, CP Saus, K Cotto, G Dunn, T Fehniger, ... Cancer Genetics 244, 24-25, 2020 | 1 | 2020 |
| 8. Integrating genomic and transcriptomic data to identify splice altering mutations across 35 cancer types K Cotto, YY Feng, Z Skidmore, A Ramu, J Kunisaki, D Conrad, Y Lin, ... Cancer Genetics 244, 3-4, 2020 | 1 | 2020 |
| Application of RegTools to TCGA samples for the identification of tumor-specific splice variants KC Cotto, YY Feng, ZL Skidmore, OL Griffith, M Griffith Cancer Research 79 (13_Supplement), 2487-2487, 2019 | 1 | 2019 |
Malachi GriffithAssociate Professor, Medicine, Washington University School of MedicineAdresse e-mail validée de wustl.edu
