Carina Farah Mugal
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Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
R Burri, A Nater, T Kawakami, CF Mugal, PI Olason, L Smeds, A Suh, ...
Genome research 25 (11), 1656-1665, 2015
A high‐density linkage map enables a second‐generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution
T Kawakami, L Smeds, N Backström, A Husby, A Qvarnström, CF Mugal, ...
Molecular ecology 23 (16), 4035-4058, 2014
Why time matters: codon evolution and the temporal dynamics of dN/dS
CF Mugal, JBW Wolf, I Kaj
Molecular biology and evolution 31 (1), 212-231, 2014
Molecular evolution of genes in avian genomes
K Nam, C Mugal, B Nabholz, H Schielzeth, JBW Wolf, N Backström, ...
Genome biology 11, 1-17, 2010
Whole‐genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine‐scale recombination rate variation in birds
T Kawakami, CF Mugal, A Suh, A Nater, R Burri, L Smeds, H Ellegren
Molecular ecology 26 (16), 4158-4172, 2017
High-resolution mapping of crossover and non-crossover recombination events by whole-genome re-sequencing of an avian pedigree
L Smeds, CF Mugal, A Qvarnström, H Ellegren
PLoS genetics 12 (5), e1006044, 2016
Transcription-induced mutational strand bias and its effect on substitution rates in human genes
CF Mugal, HH von Grünberg, M Peifer
Molecular biology and evolution 26 (1), 131-142, 2009
Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content
CF Mugal, H Ellegren
Genome biology 12, 1-12, 2011
GC‐biased gene conversion links the recombination landscape and demography to genomic base composition: GC‐biased gene conversion drives genomic base composition across a wide …
CF Mugal, CC Weber, H Ellegren
BioEssays 37 (12), 1317-1326, 2015
Divergence in gene expression within and between two closely related flycatcher species
S Uebbing, A Künstner, H Mäkinen, N Backström, P Bolivar, R Burri, ...
Molecular ecology 25 (9), 2015-2028, 2016
Recombination rate variation modulates gene sequence evolution mainly via GC-biased gene conversion, not Hill–Robertson interference, in an avian system
P Bolívar, CF Mugal, A Nater, H Ellegren
Molecular biology and evolution 33 (1), 216-227, 2016
Evolutionary consequences of DNA methylation on the GC content in vertebrate genomes
CF Mugal, PF Arndt, L Holm, H Ellegren
G3: Genes, Genomes, Genetics 5 (3), 441-447, 2015
Sex‐biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome
L Dutoit, CF Mugal, P Bolívar, M Wang, K Nadachowska‐Brzyska, ...
Molecular Ecology 27 (18), 3572-3581, 2018
Twisted signatures of GC-biased gene conversion embedded in an evolutionary stable karyotype
CF Mugal, PF Arndt, H Ellegren
Molecular biology and evolution 30 (7), 1700-1712, 2013
Covariation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting
L Dutoit, N Vijay, CF Mugal, CM Bossu, R Burri, J Wolf, H Ellegren
Proceedings of the Royal Society B: Biological Sciences 284 (1849), 20162756, 2017
Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher (Ficedula albicollis) genome
L Dutoit, R Burri, A Nater, CF Mugal, H Ellegren
Molecular ecology resources 17 (4), 586-597, 2017
Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination
CF Mugal, B Nabholz, H Ellegren
BMC genomics 14, 1-11, 2013
GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes
P Bolívar, L Guéguen, L Duret, H Ellegren, CF Mugal
Genome Biology 20, 1-13, 2019
Biased inference of selection due to GC-biased gene conversion and the rate of protein evolution in flycatchers when accounting for it
P Bolívar, CF Mugal, M Rossi, A Nater, M Wang, L Dutoit, H Ellegren
Molecular biology and evolution 35 (10), 2475-2486, 2018
Polymorphism Data Assist Estimation of the Nonsynonymous over Synonymous Fixation Rate Ratio ω for Closely Related Species
CF Mugal, VE Kutschera, F Botero-Castro, JBW Wolf, I Kaj
Molecular biology and evolution 37 (1), 260-279, 2020
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