| JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ... Nucleic acids research 46 (D1), D260-D266, 2018 | 1292 | 2018 |
| JASPAR 2020: update of the open-access database of transcription factor binding profiles O Fornes, JA Castro-Mondragon, A Khan, R Van der Lee, X Zhang, ... Nucleic acids research 48 (D1), D87-D92, 2020 | 949 | 2020 |
| RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ... Nucleic acids research 44 (D1), D133-D143, 2016 | 459 | 2016 |
| RSAT 2015: regulatory sequence analysis tools A Medina-Rivera, M Defrance, O Sand, C Herrmann, ... Nucleic acids research 43 (W1), W50-W56, 2015 | 251 | 2015 |
| Genome-wide characterization of mammalian promoters with distal enhancer functions LTM Dao, AO Galindo-Albarrán, JA Castro-Mondragon, C Andrieu-Soler, ... Nature genetics 49 (7), 1073-1081, 2017 | 181 | 2017 |
| RSAT 2018: regulatory sequence analysis tools 20th anniversary NTT Nguyen, B Contreras-Moreira, JA Castro-Mondragon, ... Nucleic acids research 46 (W1), W209-W214, 2018 | 149 | 2018 |
| RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections JA Castro-Mondragon, S Jaeger, D Thieffry, M Thomas-Chollier, ... Nucleic Acids Research 45 (13), e119-e119, 2017 | 76 | 2017 |
| JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles JA Castro-Mondragon, R Riudavets-Puig, I Rauluseviciute, ... Nucleic acids research 50 (D1), D165-D173, 2022 | 44 | 2022 |
| Genomic basis of symbiovar mimosae in Rhizobium etli MA Rogel, P Bustos, RI Santamaría, V González, D Romero, MÁ Cevallos, ... BMC genomics 15 (1), 1-10, 2014 | 28 | 2014 |
| Proteins in the periplasmic space and outer membrane vesicles of Rhizobium etli CE3 grown in minimal medium are largely distinct and change with growth phase H Taboada, N Meneses, MF Dunn, C Vargas-Lagunas, N Buchs, ... Microbiology 165 (6), 2018 | 14 | 2018 |
| Crosstalk between microRNA expression and DNA methylation drives the hormone-dependent phenotype of breast cancer MR Aure, T Fleischer, S Bjørklund, J Ankill, JA Castro-Mondragon, ... Genome medicine 13 (1), 1-21, 2021 | 12 | 2021 |
| Tuning promoter boundaries improves regulatory motif discovery in nonmodel plants: the peach example N Ksouri, JA Castro-Mondragón, F Montardit-Tarda, J van Helden, ... Plant physiology 185 (3), 1242-1258, 2021 | 10 | 2021 |
| RSAT:: Plants: Motif discovery within clusters of upstream sequences in plant genomes B Contreras-Moreira, JA Castro-Mondragon, C Rioualen, ... Plant Synthetic Promoters, 279-295, 2016 | 9 | 2016 |
| RSAT:: Plants: Motif discovery in ChIP-Seq peaks of plant genomes JA Castro-Mondragon, C Rioualen, B Contreras-Moreira, J Helden Plant Synthetic Promoters, 297-322, 2016 | 6 | 2016 |
| UniBind: maps of high-confidence direct TF-DNA interactions across nine species RR Puig, P Boddie, A Khan, JA Castro-Mondragon, A Mathelier BMC Genomics, 2021 | 5 | 2021 |
| Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of the gene regulatory program in cancers JA Castro-Mondragon, MR Aure, OC Lingjærde, A Langerød, ... bioRxiv, 2020 | 3 | 2020 |
| RSAT 2022: regulatory sequence analysis tools W Santana-Garcia, JA Castro-Mondragon, M Padilla-Gálvez, NTT Nguyen, ... Nucleic Acids Research, 2022 | 1 | 2022 |
| Genetic architecture of natural variations of cardiac performance in flies S Saha, L Spinelli, JA Castro-Mondragon, A Kervadec, L Kremmer, ... bioRxiv, 2021 | 1 | 2021 |
| Epromoters function as a hub to recruit key transcription factors required for the inflammatory response D Santiago-Algarra, C Souaid, H Singh, L Dao, S Hussain, ... Nature communications 12 (1), 1-18, 2021 | | 2021 |
| RhizoBindingSites, a Database of DNA-Binding Motifs in Nitrogen-Fixing Bacteria Inferred Using a Footprint Discovery Approach H Taboada-Castro, JA Castro-Mondragón, A Aguilar-Vera, ... Frontiers in Microbiology 11, 2766, 2020 | | 2020 |
Anthony MathelierGroup Leader, Centre for Molecular Medicine Norway (NCMM), University of Oslo and Oslo UniversityVerified email at ncmm.uio.no
