Jeroen de Ridder
Jeroen de Ridder
Associate professor University Medical Center Utrecht
Adresse e-mail validée de umcutrecht.nl - Page d'accueil
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The deubiquitinase USP9X suppresses pancreatic ductal adenocarcinoma
PA Pérez-Mancera, AG Rust, L Van Der Weyden, G Kristiansen, A Li, ...
Nature 486 (7402), 266-270, 2012
2642012
Chromatin position effects assayed by thousands of reporters integrated in parallel
W Akhtar, J de Jong, AV Pindyurin, L Pagie, W Meuleman, J de Ridder, ...
Cell 154 (4), 914-927, 2013
2242013
Large-scale mutagenesis in p19ARF-and p53-deficient mice identifies cancer genes and their collaborative networks
AG Uren, J Kool, K Matentzoglu, J de Ridder, J Mattison, M van Uitert, ...
Cell 133 (4), 727-741, 2008
1892008
Insertional mutagenesis identifies multiple networks of cooperating genes driving intestinal tumorigenesis
HN March, AG Rust, NA Wright, J ten Hoeve, J de Ridder, M Eldridge, ...
Nature genetics 43 (12), 1202, 2011
1682011
From squiggle to basepair: computational approaches for improving nanopore sequencing read accuracy
FJ Rang, WP Kloosterman, J de Ridder
Genome biology 19 (1), 90, 2018
1462018
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2018
1352018
Detecting statistically significant common insertion sites in retroviral insertional mutagenesis screens
J De Ridder, A Uren, J Kool, M Reinders, L Wessels
PLoS Comput Biol 2 (12), e166, 2006
1282006
Mapping and phasing of structural variation in patient genomes using nanopore sequencing
MC Stancu, MJ Van Roosmalen, I Renkens, MM Nieboer, S Middelkamp, ...
Nature communications 8 (1), 1-13, 2017
1262017
Identification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data
C Klijn, H Holstege, J de Ridder, X Liu, M Reinders, J Jonkers, L Wessels
Nucleic acids research 36 (2), e13-e13, 2008
782008
Enhancer hubs and loop collisions identified from single-allele topologies
A Allahyar, C Vermeulen, BAM Bouwman, PHL Krijger, MJAM Verstegen, ...
Nature genetics 50 (8), 1151-1160, 2018
672018
Chromatin landscapes of retroviral and transposon integration profiles
J de Jong, W Akhtar, J Badhai, AG Rust, R Rad, J Hilkens, A Berns, ...
PLoS Genet 10 (4), e1004250, 2014
662014
Pattern recognition in bioinformatics
D de Ridder, J de Ridder, MJT Reinders
Briefings in bioinformatics 14 (5), 633-647, 2013
582013
PAX5 is a tumor suppressor in mouse mutagenesis models of acute lymphoblastic leukemia
J Dang, L Wei, J De Ridder, X Su, AG Rust, KG Roberts, D Payne-Turner, ...
Blood 125 (23), 3609-3617, 2015
562015
Novel candidate cancer genes identified by a large-scale cross-species comparative oncogenomics approach
J Mattison, J Kool, AG Uren, J De Ridder, L Wessels, J Jonkers, ...
Cancer research 70 (3), 883-895, 2010
472010
Genome wide DNA methylation profiles provide clues to the origin and pathogenesis of germ cell tumors
MA Rijlaarsdam, DMJ Tax, AJM Gillis, LCJ Dorssers, DC Koestler, ...
PLoS One 10 (4), e0122146, 2015
382015
Insertional mutagenesis in mice deficient for p15Ink4b, p16Ink4a, p21Cip1, and p27Kip1 reveals cancer gene interactions and correlations with tumor phenotypes
J Kool, AG Uren, CP Martins, D Sie, J De Ridder, G Turner, M Van Uitert, ...
Cancer research 70 (2), 520-531, 2010
382010
FERAL: network-based classifier with application to breast cancer outcome prediction
A Allahyar, J De Ridder
Bioinformatics 31 (12), i311-i319, 2015
362015
Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion
S Babaei, M Hulsman, M Reinders, J de Ridder
BMC bioinformatics 14 (1), 29, 2013
352013
Hi-C chromatin interaction networks predict co-expression in the mouse cortex
S Babaei, A Mahfouz, M Hulsman, BPF Lelieveldt, J de Ridder, ...
PLoS Comput Biol 11 (5), e1004221, 2015
342015
Computational identification of insertional mutagenesis targets for cancer gene discovery
J de Jong, J de Ridder, L van der Weyden, N Sun, M van Uitert, A Berns, ...
Nucleic acids research 39 (15), e105-e105, 2011
332011
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