Szymon M. Kiełbasa

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Coauteurs

Hanspeter HerzelInstitute for Theoretical BiologyAdresse e-mail validée de biologie.hu-berlin.de
Hailiang MeiLeiden University Medical CenterAdresse e-mail validée de lumc.nl
Nils BlüthgenComputational Modelling in Medicine - Charité - IRI Life SciencesAdresse e-mail validée de sys-bio.net
Martin VingronMax-Planck-Institut für molekulare GenetikAdresse e-mail validée de molgen.mpg.de
Kees van BergenLeiden University Medical CenterAdresse e-mail validée de ziggo.nl
Dieter BeuleCore Unit Bioinformatics - Berlin Institute of Health, Max-Delbrück-Center, CharitéAdresse e-mail validée de bihealth.de
Peter A.C. 't HoenProfessor Bioinformatics, Centre for Molecular and Biomolecular Informatics, Radboudumc NijmegenAdresse e-mail validée de radboudumc.nl
Paul HortonNCKU, TaiwanAdresse e-mail validée de iscb.org
Martin FrithNational Institute of Advanced Industrial Science and Technology (AIST), University of TokyoAdresse e-mail validée de edu.k.u-tokyo.ac.jp
Raymond WanThe Chinese University of Hong KongAdresse e-mail validée de cuhk.edu.hk
Marcelo NavarreteProfessor of Molecular Medicine, University of MagallanesAdresse e-mail validée de umag.cl
Bas HeijmansLeiden University Medical Center, The NetherlandsAdresse e-mail validée de lumc.nl
P. Eline SlagboomProfessor Molecular Epidemiology, Leiden University Medical CenterAdresse e-mail validée de lumc.nl
Eka SuchimanLeiden University Medical CenterAdresse e-mail validée de lumc.nl
Kengo SatoKeio University, JapanAdresse e-mail validée de bio.keio.ac.jp
Kasia BozekCenter for Molecular Medicine CologneAdresse e-mail validée de uni-koeln.de
Jan KorbelSenior Scientist Genome Biology & Head of Data Science, EMBL HeidelbergAdresse e-mail validée de embl.de
Maarten van ItersonLeiden University Medical CenterAdresse e-mail validée de lumc.nl
Tomasz ZemojtelHead of Genomics Platform, Berlin Institute of Health, University Clinics ChariteAdresse e-mail validée de bihealth.de
Lude FrankeProfessor of Functional Genomics, University Medical Centre GroningenAdresse e-mail validée de cleverfranke.com

Szymon M. Kiełbasa

Biomedical Data Sciences

Adresse e-mail validée de lumc.nl

transcriptomics allelic expression genomic imprinting reference bias data science


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Adaptive seeds tame genomic sequence comparison SM Kiełbasa, R Wan, K Sato, P Horton, MC Frith Genome research 21 (3), 487-493, 2011	785	2011
Evaluation of methods for modeling transcription factor sequence specificity MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ... Nature biotechnology 31 (2), 126-134, 2013	298	2013
Regulation of clock-controlled genes in mammals K Bozek, A Relógio, SM Kielbasa, M Heine, C Dame, A Kramer, H Herzel PloS one 4 (3), e4882, 2009	269	2009
Disease variants alter transcription factor levels and methylation of their binding sites MJ Bonder, R Luijk, DV Zhernakova, M Moed, P Deelen, M Vermaat, ... Nature genetics 49 (1), 131-138, 2017	239	2017
Biological profiling of gene groups utilizing Gene Ontology N Blüthgen, K Brand, B Cajavec, M Swat, H Herzel, D Beule Genome Informatics 16 (1), 106-115, 2005	228	2005
Identification of context-dependent expression quantitative trait loci in whole blood DV Zhernakova, P Deelen, M Vermaat, M Van Iterson, M Van Galen, ... Nature genetics 49 (1), 139-145, 2017	224	2017
Genetic and environmental influences interact with age and sex in shaping the human methylome J Van Dongen, MG Nivard, G Willemsen, JJ Hottenga, Q Helmer, ... Nature communications 7 (1), 1-13, 2016	181	2016
Mutations in PIGO, a member of the GPI-anchor-synthesis pathway, cause hyperphosphatasia with mental retardation PM Krawitz, Y Murakami, J Hecht, U Krüger, SE Holder, GR Mortier, ... The American Journal of Human Genetics 91 (1), 146-151, 2012	131	2012
Eleven grand challenges in single-cell data science D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ... Genome biology 21 (1), 1-35, 2020	106	2020
Improving phenotypic prediction by combining genetic and epigenetic associations S Shah, MJ Bonder, RE Marioni, Z Zhu, AF McRae, A Zhernakova, ... The American Journal of Human Genetics 97 (1), 75-85, 2015	84	2015
Identification of Y-box binding protein 1 as a core regulator of MEK/ERK pathway-dependent gene signatures in colorectal cancer cells K Jürchott, RJ Kuban, T Krech, N Blüthgen, U Stein, W Walther, C Friese, ... PLoS Genet 6 (12), e1001231, 2010	79	2010
Two Plasmodium 6‐Cys family‐related proteins have distinct and critical roles in liver‐stage development T Annoura, BCL van Schaijk, IHJ Ploemen, M Sajid, J Lin, MW Vos, ... The FASEB Journal 28 (5), 2158-2170, 2014	77	2014
Measuring similarities between transcription factor binding sites SM Kielbasa, D Gonze, H Herzel BMC bioinformatics 6 (1), 1-11, 2005	77	2005
HuSiDa—the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells M Truss, M Swat, SM Kielbasa, R Schäfer, H Herzel, C Hagemeier Nucleic acids research 33 (suppl_1), D108-D111, 2005	68	2005
Methylation and deamination of CpGs generate p53-binding sites on a genomic scale T Zemojtel, SM Kielbasa, PF Arndt, HR Chung, M Vingron Trends in genetics 25 (2), 63-66, 2009	66	2009
Inferring combinatorial regulation of transcription in silico N Blüthgen, SM Kiełbasa, H Herzel Nucleic acids research 33 (1), 272-279, 2005	66	2005
A systems biological approach suggests that transcriptional feedback regulation by dual‐specificity phosphatase 6 shapes extracellular signal‐related kinase activity in RAS … N Blüthgen, S Legewie, SM Kielbasa, A Schramme, O Tchernitsa, J Keil, ... The FEBS journal 276 (4), 1024-1035, 2009	65	2009
Combining frequency and positional information to predict transcription factor binding sites SM Kiełbasa, JO Korbel, D Beule, J Schuchhardt, H Herzel Bioinformatics 17 (11), 1019-1026, 2001	65	2001
DNA methylation analysis identifies loci for blood pressure regulation MA Richard, T Huan, S Ligthart, R Gondalia, MA Jhun, JA Brody, MR Irvin, ... The American Journal of Human Genetics 101 (6), 888-902, 2017	53	2017
Quaking promotes monocyte differentiation into pro-atherogenic macrophages by controlling pre-mRNA splicing and gene expression RG De Bruin, L Shiue, J Prins, HC De Boer, A Singh, WS Fagg, ... Nature communications 7 (1), 1-20, 2016	48	2016

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