Sophie Abby
Sophie Abby
CNRS researcher, Université Grenoble Alpes
Verified email at univ-grenoble-alpes.fr - Homepage
TitleCited byYear
The Non-Flagellar Type III Secretion System Evolved from the Bacterial Flagellum and Diversified into Host-Cell Adapted Systems
SS Abby, EPC Rocha
PLoS Genetics 8 (9), e1002983, 2012
1642012
Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations
GJ Szöllősi, B Boussau, SS Abby, E Tannier, V Daubin
Proceedings of the National Academy of Sciences 109 (43), 17513-17518, 2012
1342012
Identification of protein secretion systems in bacterial genomes
SS Abby, J Cury, J Guglielmini, B Néron, M Touchon, EPC Rocha
Scientific reports 6, 23080, 2016
1132016
Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion
J Guglielmini, B Néron, SS Abby, MP Garcillán-Barcia, F de la Cruz, ...
Nucleic acids research 42 (9), 5715-5727, 2014
1082014
Lateral gene transfer as a support for the tree of life
SS Abby, E Tannier, M Gouy, V Daubin
Proceedings of the National Academy of Sciences 109 (13), 4962-4967, 2012
1022012
Comparative genomics and the evolution of prokaryotes
S Abby, V Daubin
Trends in microbiology 15 (3), 135-141, 2007
922007
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests
SS Abby, E Tannier, M Gouy, V Daubin
BMC bioinformatics 11 (1), 324, 2010
722010
MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems
SS Abby, B Néron, H Ménager, M Touchon, EPC Rocha
PLOS ONE 9 (10), e110726, 2014
622014
Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers
M Kerou, P Offre, L Valledor, SS Abby, M Melcher, M Nagler, ...
Proceedings of the National Academy of Sciences 113 (49), E7937-E7946, 2016
502016
Immune Subversion and Quorum-Sensing Shape the Variation in Infectious Dose among Bacterial Pathogens
JA Gama, SS Abby, S Vieira-Silva, F Dionisio, EPC Rocha
PLoS Pathogens 8 (2), e1002503, 2012
392012
Bacteria in Ostreococcus tauri cultures–friends, foes or hitchhikers?
SS Abby, M Touchon, A De Jode, N Grimsley, G Piganeau
Frontiers in microbiology 5, 505, 2014
232014
Candidatus Nitrosocaldus cavascurensis, an ammonia oxidizing, extremely thermophilic archaeon with a highly mobile genome
SS Abby, M Melcher, M Kerou, M Krupovic, M Stieglmeier, C Rossel, ...
Frontiers in microbiology 9, 28, 2018
192018
Asynchronous division by non-ring FtsZ in the gammaproteobacterial symbiont of Robbea hypermnestra.
N Leisch, N Pende, PM Weber, HR Gruber-Vodicka, J Verheul, ...
Nature Microbiology 2, 16182, 2016
152016
A Single Amino Acid Substitution Changes the Self-Assembly Status of a Type IV Piliation Secretin
NN Nickerson, SS Abby, EPC Rocha, M Chami, AP Pugsley
Journal of Bacteriology 194 (18), 4951-4958, 2012
132012
Investment in rapid growth shapes the evolutionary rates of essential proteins
S Vieira-Silva, M Touchon, SS Abby, EPC Rocha
Proceedings of the National Academy of Sciences 108 (50), 20030-20035, 2011
112011
Identification of Protein Secretion Systems in Bacterial Genomes Using MacSyFinder
SS Abby, EPC Rocha
Bacterial Protein Secretion Systems: Methods and Protocols, 1-21, 2017
102017
Robust Frankia phylogeny, species delineation and intraspecies diversity based on Multi-Locus Sequence Analysis (MLSA) and Single-Locus Strain Typing (SLST) adapted to a large …
AC Pozzi, HH Bautista-Guerrero, SS Abby, A Herrera-Belaroussi, ...
Systematic and applied microbiology 41 (4), 311-323, 2018
42018
Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility
R Denise, SS Abby, EPC Rocha
PLOS Biology 17 (7), e3000390, 2019
3*2019
Testing for Independence between Evolutionary Processes
A Behdenna, J Pothier, SS Abby, A Lambert, G Achaz
Systematic biology 65 (5), 812-823, 2016
32016
Ammonia oxidation by the arctic terrestrial thaumarchaeote Ca. Nitrosocosmicus arcticus is stimulated by increasing temperatures
RJE Alves, M Kerou, A Zappe, R Bittner, SS Abby, H Schmidt, K Pfeifer, ...
Frontiers in Microbiology 10, 1571, 2019
12019
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