| Identification of protein secretion systems in bacterial genomes SS Abby, J Cury, J Guglielmini, B Néron, M Touchon, EPC Rocha Scientific reports 6, 23080, 2016 | 394 | 2016 |
| MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems SS Abby, B Néron, H Ménager, M Touchon, EPC Rocha PLOS ONE 9 (10), e110726, 2014 | 363 | 2014 |
| The Non-Flagellar Type III Secretion System Evolved from the Bacterial Flagellum and Diversified into Host-Cell Adapted Systems SS Abby, EPC Rocha PLoS Genetics 8 (9), e1002983, 2012 | 340 | 2012 |
| Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion J Guglielmini, B Néron, SS Abby, MP Garcillán-Barcia, F de la Cruz, ... Nucleic acids research 42 (9), 5715-5727, 2014 | 223 | 2014 |
| Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations GJ Szöllősi, B Boussau, SS Abby, E Tannier, V Daubin Proceedings of the National Academy of Sciences 109 (43), 17513-17518, 2012 | 197 | 2012 |
| Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers M Kerou, P Offre, L Valledor, SS Abby, M Melcher, M Nagler, ... Proceedings of the National Academy of Sciences 113 (49), E7937-E7946, 2016 | 190 | 2016 |
| Lateral gene transfer as a support for the tree of life SS Abby, E Tannier, M Gouy, V Daubin Proceedings of the National Academy of Sciences 109 (13), 4962-4967, 2012 | 153 | 2012 |
| Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility R Denise, SS Abby, EPC Rocha PLOS Biology 17 (7), e3000390, 2019 | 144 | 2019 |
| Comparative genomics and the evolution of prokaryotes S Abby, V Daubin Trends in microbiology 15 (3), 135-141, 2007 | 116 | 2007 |
| Candidatus Nitrosocaldus cavascurensis, an ammonia oxidizing, extremely thermophilic archaeon with a highly mobile genome SS Abby, M Melcher, M Kerou, M Krupovic, M Stieglmeier, C Rossel, ... Frontiers in Microbiology, 28, 2018 | 94 | 2018 |
| Identification of Protein Secretion Systems in Bacterial Genomes Using MacSyFinder SS Abby, EPC Rocha Bacterial Protein Secretion Systems: Methods and Protocols, 1-21, 2017 | 82 | 2017 |
| Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests SS Abby, E Tannier, M Gouy, V Daubin BMC bioinformatics 11 (1), 324, 2010 | 82 | 2010 |
| Identifying conjugative plasmids and integrative conjugative elements with CONJscan J Cury, SS Abby, O Doppelt-Azeroual, B Néron, EPC Rocha Horizontal Gene Transfer: Methods and Protocols, 265-283, 2020 | 66 | 2020 |
| Immune Subversion and Quorum-Sensing Shape the Variation in Infectious Dose among Bacterial Pathogens JA Gama, SS Abby, S Vieira-Silva, F Dionisio, EPC Rocha PLoS Pathogens 8 (2), e1002503, 2012 | 62 | 2012 |
| Advances in bacterial pathways for the biosynthesis of ubiquinone SS Abby, K Kazemzadeh, C Vragniau, L Pelosi, F Pierrel Biochimica et Biophysica Acta (BBA)-Bioenergetics 1861 (11), 148259, 2020 | 60 | 2020 |
| Ammonia oxidation by the arctic terrestrial thaumarchaeote Ca. Nitrosocosmicus arcticus is stimulated by increasing temperatures RJE Alves, M Kerou, A Zappe, R Bittner, SS Abby, H Schmidt, K Pfeifer, ... Frontiers in Microbiology 10, 1571, 2019 | 60* | 2019 |
| Genomes of Thaumarchaeota from deep sea sediments reveal specific adaptations of three independently evolved lineages M Kerou, RI Ponce-Toledo, R Zhao, SS Abby, M Hirai, H Nomaki, ... The ISME Journal, 1-17, 2021 | 49 | 2021 |
| The Evolution of Protein Secretion Systems by Co-option and Tinkering of Cellular Machineries R Denise, SS Abby, EPC Rocha Trends in Microbiology 28 (5), 372-386, 2020 | 49 | 2020 |
| MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes B Néron, R Denise, C Coluzzi, M Touchon, EPC Rocha, SS Abby Peer Community Journal 3, 2023 | 47 | 2023 |
| Ubiquinone Biosynthesis over the Entire O2 Range: Characterization of a Conserved O2-Independent Pathway L Pelosi, SS Abby, L Loiseau, B Rascalou, MH Chehade, B Faivre, ... mBio 10 (4), e01319-19, 2019 | 42 | 2019 |
Eduardo RochaCNRS, Institut PasteurVerified email at pasteur.fr
