Kevin Y Yip
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An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
122252012
Architecture of the human regulatory network derived from ENCODE data
MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ...
Nature 489 (7414), 91-100, 2012
14482012
A User’s Guide to the Encyclopedia of DNA Elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
12492011
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ...
Science 330 (6012), 1775-1787, 2010
9482010
Efficient clustering of uncertain data
WK Ngai, B Kao, CK Chui, R Cheng, M Chau, KY Yip
Sixth International Conference on Data Mining (ICDM'06), 436-445, 2006
3362006
The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery
HG Stunnenberg, The International Human Epigenome Consortium, ...
Cell 167 (5), 1145-1149, 2016
3092016
Decision trees for uncertain data
S Tsang, B Kao, KY Yip, WS Ho, SD Lee
IEEE transactions on knowledge and data engineering 23 (1), 64-78, 2009
3072009
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
KY Yip, C Cheng, N Bhardwaj, JB Brown, J Leng, A Kundaje, J Rozowsky, ...
Genome biology 13 (9), 1-22, 2012
2672012
Comparative analysis of the transcriptome across distant species
MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ...
Nature 512 (7515), 445-448, 2014
2652014
FunSeq2: a framework for prioritizing noncoding regulatory variants in cancer
Y Fu, Z Liu, S Lou, J Bedford, XJ Mu, KY Yip, E Khurana, M Gerstein
Genome biology 15 (10), 1-15, 2014
2572014
Harp: A practical projected clustering algorithm
KY Yip, DW Cheung, MK Ng
IEEE Transactions on knowledge and data engineering 16 (11), 1387-1397, 2004
2022004
Extensive in vivo metabolite-protein interactions revealed by large-scale systematic analyses
X Li, TA Gianoulis, KY Yip, M Gerstein, M Snyder
Cell 143 (4), 639-650, 2010
1962010
Mining periodic patterns with gap requirement from sequences
M Zhang, B Kao, DW Cheung, KY Yip
ACM Transactions on Knowledge Discovery from Data (TKDD) 1 (2), 7-es, 2007
1832007
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
C Cheng, R Alexander, R Min, J Leng, KY Yip, J Rozowsky, KK Yan, ...
Genome research 22 (9), 1658-1667, 2012
1702012
Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation
S Lou, HM Lee, H Qin, JW Li, Z Gao, X Liu, LL Chan, VKL Lam, WY So, ...
Genome Biology 15 (7), 408, 2014
1632014
Exome and genome sequencing of nasopharynx cancer identifies NF-κB pathway activating mutations
YY Li, GTY Chung, VWY Lui, KF To, BBY Ma, C Chow, K John, S Woo, ...
Nature communications 8 (1), 1-10, 2017
1562017
YeastHub: a semantic web use case for integrating data in the life sciences domain
KH Cheung, KY Yip, A Smith, R Deknikker, A Masiar, M Gerstein
Bioinformatics 21 (suppl_1), i85-i96, 2005
1482005
Reconstruction of enhancer–target networks in 935 samples of human primary cells, tissues and cell lines
Q Cao, C Anyansi, X Hu, L Xu, L Xiong, W Tang, MTS Mok, C Cheng, ...
Nature Genetics 201, 7, 2017
1342017
Improved reconstruction of in silico gene regulatory networks by integrating knockout and perturbation data
KY Yip, RP Alexander, KK Yan, M Gerstein
PloS one 5 (1), e8121, 2010
1312010
A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets
C Cheng, KK Yan, KY Yip, J Rozowsky, R Alexander, C Shou, M Gerstein
Genome biology 12 (2), 1-18, 2011
1302011
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