| The molecular taxonomy of primary prostate cancer CGAR Network Cell 163 (4), 1011-1025, 2015 | 1405* | 2015 |
| Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin KA Hoadley, C Yau, DM Wolf, AD Cherniack, D Tamborero, S Ng, ... Cell 158 (4), 929-944, 2014 | 1080 | 2014 |
| Multiple reference genomes and transcriptomes for Arabidopsis thaliana X Gan, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ... Nature 477 (7365), 419-423, 2011 | 628 | 2011 |
| Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013 | 536 | 2013 |
| Systematic evaluation of spliced alignment programs for RNA-seq data PG Engström, T Steijger, B Sipos, GR Grant, A Kahles, G Rätsch, ... Nature methods 10 (12), 1185-1191, 2013 | 456 | 2013 |
| Pan-cancer analysis of whole genomes I The, TPCA of Whole, Genomes Consortium Nature 578 (7793), 82, 2020 | 323 | 2020 |
| DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation MJ Dubin, P Zhang, D Meng, MS Remigereau, EJ Osborne, FP Casale, ... elife 4, e05255, 2015 | 302 | 2015 |
| Comprehensive analysis of alternative splicing across tumors from 8,705 patients A Kahles, KV Lehmann, NC Toussaint, M Hüser, SG Stark, ... Cancer cell 34 (2), 211-224. e6, 2018 | 247 | 2018 |
| Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the Arabidopsis steady state transcriptome G Drechsel, A Kahles, AK Kesarwani, E Stauffer, J Behr, P Drewe, ... The Plant Cell 25 (10), 3726-3742, 2013 | 153 | 2013 |
| Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020 | 138 | 2020 |
| RNA‐Seq read alignments with PALMapper G Jean, A Kahles, VT Sreedharan, FD Bona, G Rätsch Current protocols in bioinformatics 32 (1), 11.6. 1-11.6. 37, 2010 | 80 | 2010 |
| SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data A Kahles, CS Ong, Y Zhong, G Rätsch Bioinformatics, btw076, 2016 | 70 | 2016 |
| Polypyrimidine tract binding protein homologs from Arabidopsis are key regulators of alternative splicing with implications in fundamental developmental processes C Rühl, E Stauffer, A Kahles, G Wagner, G Drechsel, G Rätsch, A Wachter The Plant Cell 24 (11), 4360-4375, 2012 | 70 | 2012 |
| MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples J Behr, A Kahles, Y Zhong, VT Sreedharan, P Drewe, G Rätsch Bioinformatics 29 (20), 2529-2538, 2013 | 59 | 2013 |
| Genomic basis for RNA alterations in cancer C Calabrese, NR Davidson, D Demircioğlu, NA Fonseca, Y He, A Kahles, ... Nature 578 (7793), 129-136, 2020 | 53 | 2020 |
| Accurate detection of differential RNA processing P Drewe, O Stegle, L Hartmann, A Kahles, R Bohnert, A Wachter, ... Nucleic acids research 41 (10), 5189-5198, 2013 | 47 | 2013 |
| Alternative splicing substantially diversifies the transcriptome during early photomorphogenesis and correlates with the energy availability in Arabidopsis L Hartmann, P Drewe-Boß, T Wießner, G Wagner, S Geue, HC Lee, ... The Plant Cell 28 (11), 2715-2734, 2016 | 46 | 2016 |
| Genome graphs AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ... bioRxiv, 101378, 2017 | 39 | 2017 |
| Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes E Rheinbay, MM Nielsen, F Abascal, G Tiao, H Hornshøj, JM Hess, ... BioRxiv, 237313, 2017 | 37 | 2017 |
| MMR: a tool for read multi-mapper resolution A Kahles, J Behr, G Rätsch Bioinformatics 32 (5), 770-772, 2016 | 34 | 2016 |
Gunnar RätschProfessor, ETH ZürichVerified email at inf.ethz.ch
