John Marioni
TitreCitée parAnnée
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
JC Marioni, CE Mason, SM Mane, M Stephens, Y Gilad
Genome research 18 (9), 1509-1517, 2008
27092008
Understanding mechanisms underlying human gene expression variation with RNA sequencing
JK Pickrell, JC Marioni, AA Pai, JF Degner, BE Engelhardt, E Nkadori, ...
Nature 464 (7289), 768, 2010
12062010
Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics
A Sottoriva, I Spiteri, SGM Piccirillo, A Touloumis, VP Collins, JC Marioni, ...
Proceedings of the National Academy of Sciences 110 (10), 4009-4014, 2013
10202013
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
F Buettner, KN Natarajan, FP Casale, V Proserpio, A Scialdone, FJ Theis, ...
Nature biotechnology 33 (2), 155, 2015
6442015
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
TA Down, VK Rakyan, DJ Turner, P Flicek, H Li, E Kulesha, S Graef, ...
Nature biotechnology 26 (7), 779, 2008
6312008
Computational and analytical challenges in single-cell transcriptomics
O Stegle, SA Teichmann, JC Marioni
Nature Reviews Genetics 16 (3), 133-145, 2015
5882015
Accounting for technical noise in single-cell RNA-seq experiments
P Brennecke, S Anders, JK Kim, AA Kołodziejczyk, X Zhang, V Proserpio, ...
Nature methods 10 (11), 1093, 2013
5372013
The technology and biology of single-cell RNA sequencing
AA Kolodziejczyk, JK Kim, V Svensson, JC Marioni, SA Teichmann
Molecular cell 58 (4), 610-620, 2015
4452015
Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data
JF Degner, JC Marioni, AA Pai, JK Pickrell, E Nkadori, Y Gilad, ...
Bioinformatics 25 (24), 3207-3212, 2009
4342009
Science forum: the human cell atlas
A Regev, SA Teichmann, ES Lander, I Amit, C Benoist, E Birney, ...
Elife 6, e27041, 2017
3892017
An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
VK Rakyan, TA Down, NP Thorne, P Flicek, E Kulesha, S Gräf, ...
Genome research 18 (9), 1518-1529, 2008
3692008
High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer
SF Chin, AE Teschendorff, JC Marioni, Y Wang, NL Barbosa-Morais, ...
Genome biology 8 (10), R215, 2007
3092007
Pooling across cells to normalize single-cell RNA sequencing data with many zero counts
ATL Lun, K Bach, JC Marioni
Genome biology 17 (1), 75, 2016
2922016
Tools for mapping high-throughput sequencing data
NA Fonseca, J Rung, A Brazma, JC Marioni
Bioinformatics 28 (24), 3169-3177, 2012
2862012
Expression Atlas update—a database of gene and transcript expression from microarray-and sequencing-based functional genomics experiments
R Petryszak, T Burdett, B Fiorelli, NA Fonseca, M Gonzalez-Porta, ...
Nucleic acids research 42 (D1), D926-D932, 2014
2772014
Sex-specific and lineage-specific alternative splicing in primates
R Blekhman, JC Marioni, P Zumbo, M Stephens, Y Gilad
Genome research 20 (2), 180-189, 2010
2532010
A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor
ATL Lun, DJ McCarthy, JC Marioni
F1000Research 5, 2016
2522016
Single cell RNA-sequencing of pluripotent states unlocks modular transcriptional variation
AA Kolodziejczyk, JK Kim, JCH Tsang, T Ilicic, J Henriksson, ...
Cell stem cell 17 (4), 471-485, 2015
2452015
Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors
L Haghverdi, ATL Lun, MD Morgan, JC Marioni
Nature biotechnology 36 (5), 421, 2018
2272018
High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin
K Achim, JB Pettit, LR Saraiva, D Gavriouchkina, T Larsson, D Arendt, ...
Nature biotechnology 33 (5), 503, 2015
2102015
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